Class information for:
Level 1: C DI GMP//DIGUANYLATE CYCLASE//CYCLIC DI GMP

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
6304 1502 54.2 91%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
7 4 INFECTIOUS DISEASES//MICROBIOLOGY//VIROLOGY 1353914
33 3       JOURNAL OF BACTERIOLOGY//MICROBIOLOGY//MOLECULAR MICROBIOLOGY 107033
910 2             QUORUM SENSING//PSEUDOMONAS AERUGINOSA//N ACYL HOMOSERINE LACTONE 11236
6304 1                   C DI GMP//DIGUANYLATE CYCLASE//CYCLIC DI GMP 1502

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 C DI GMP authKW 1116394 6% 62% 88
2 DIGUANYLATE CYCLASE authKW 449879 2% 76% 29
3 CYCLIC DI GMP authKW 389240 2% 64% 30
4 GGDEF authKW 204973 1% 92% 11
5 EAL DOMAIN authKW 195145 1% 80% 12
6 INFORMAT SCI HUMAN INFORMAT address 172184 1% 71% 12
7 PILZ authKW 164656 1% 90% 9
8 C DI AMP authKW 163974 1% 73% 11
9 CYCLIC DIGUANYLATE authKW 162625 1% 100% 8
10 GGDEF DOMAIN authKW 153724 1% 69% 11

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Microbiology 35094 63% 0% 948
2 Biochemistry & Molecular Biology 1215 27% 0% 400
3 Biotechnology & Applied Microbiology 570 10% 0% 144
4 Infectious Diseases 214 4% 0% 65
5 Biochemical Research Methods 186 5% 0% 70
6 Immunology 98 6% 0% 87
7 Biophysics 68 4% 0% 54
8 Parasitiology 58 2% 0% 23
9 Virology 41 2% 0% 27
10 Cell Biology 22 4% 0% 63

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 INFORMAT SCI HUMAN INFORMAT 172184 1% 71% 12
2 CORE UNIT METABOL 134507 1% 44% 15
3 SING ORE ENVIRONM LIFE SCI ENGN 111601 3% 13% 41
4 COSTERTON BIOFILM 76208 1% 25% 15
5 UC CARE 60984 0% 100% 3
6 NCHU AGR BIOTECHNOL 54206 0% 67% 4
7 INT HLTH IMMUNOL MICROBIOL 50046 3% 5% 46
8 MARINE BIOINNOVAT 41885 2% 8% 25
9 UPR9027 41150 1% 23% 9
10 MICROBIAL BIOFILMS AGROBIOTECNOLIDAB 40656 0% 100% 2

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF BACTERIOLOGY 24214 13% 1% 199
2 ENVIRONMENTAL MICROBIOLOGY 13806 3% 1% 51
3 MOLECULAR MICROBIOLOGY 13167 6% 1% 88
4 ENVIRONMENTAL MICROBIOLOGY REPORTS 6069 1% 2% 15
5 MICROBIOLOGY-SGM 4962 3% 1% 44
6 MBIO 4154 1% 1% 19
7 CURRENT OPINION IN MICROBIOLOGY 3984 1% 1% 19
8 BMC MICROBIOLOGY 1889 1% 1% 17
9 RESEARCH IN MICROBIOLOGY 1709 1% 1% 15
10 APPLIED AND ENVIRONMENTAL MICROBIOLOGY 1695 3% 0% 51

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 C DI GMP 1116394 6% 62% 88 Search C+DI+GMP Search C+DI+GMP
2 DIGUANYLATE CYCLASE 449879 2% 76% 29 Search DIGUANYLATE+CYCLASE Search DIGUANYLATE+CYCLASE
3 CYCLIC DI GMP 389240 2% 64% 30 Search CYCLIC+DI+GMP Search CYCLIC+DI+GMP
4 GGDEF 204973 1% 92% 11 Search GGDEF Search GGDEF
5 EAL DOMAIN 195145 1% 80% 12 Search EAL+DOMAIN Search EAL+DOMAIN
6 PILZ 164656 1% 90% 9 Search PILZ Search PILZ
7 C DI AMP 163974 1% 73% 11 Search C+DI+AMP Search C+DI+AMP
8 CYCLIC DIGUANYLATE 162625 1% 100% 8 Search CYCLIC+DIGUANYLATE Search CYCLIC+DIGUANYLATE
9 GGDEF DOMAIN 153724 1% 69% 11 Search GGDEF+DOMAIN Search GGDEF+DOMAIN
10 DIADENYLATE CYCLASE 121969 0% 100% 6 Search DIADENYLATE+CYCLASE Search DIADENYLATE+CYCLASE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 ROMLING, U , GALPERIN, MY , GOMELSKY, M , (2013) CYCLIC DI-GMP: THE FIRST 25 YEARS OF A UNIVERSAL BACTERIAL SECOND MESSENGER.MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. VOL. 77. ISSUE 1. P. 1 -52 280 63% 352
2 CHOU, SH , GALPERIN, MY , (2016) DIVERSITY OF CYCLIC DI-GMP-BINDING PROTEINS AND MECHANISMS.JOURNAL OF BACTERIOLOGY. VOL. 198. ISSUE 1. P. 32 -46 72 78% 14
3 VALENTINI, M , FILLOUX, A , (2016) BIOFILMS AND CYCLIC DI-GMP (C-DI-GMP) SIGNALING: LESSONS FROM PSEUDOMONAS AERUGINOSA AND OTHER BACTERIA.JOURNAL OF BIOLOGICAL CHEMISTRY. VOL. 291. ISSUE 24. P. 12547 -12555 80 83% 8
4 KALIA, D , MEREY, G , NAKAYAMA, S , ZHENG, Y , ZHOU, J , LUO, YL , GUO, M , ROEMBKE, BT , SINTIM, HO , (2013) NUCLEOTIDE, C-DI-GMP, C-DI-AMP, CGMP, CAMP, (P)PPGPP SIGNALING IN BACTERIA AND IMPLICATIONS IN PATHOGENESIS.CHEMICAL SOCIETY REVIEWS. VOL. 42. ISSUE 1. P. 305-341 150 51% 75
5 CALY, DL , BELLINI, D , WALSH, MA , DOW, JM , RYAN, RP , (2015) TARGETING CYCLIC DI-GMP SIGNALLING: A STRATEGY TO CONTROL BIOFILM FORMATION?.CURRENT PHARMACEUTICAL DESIGN. VOL. 21. ISSUE 1. P. 12 -24 96 91% 9
6 OPOKU-TEMENG, C , ZHOU, J , ZHENG, Y , SU, JM , SINTIM, HO , (2016) CYCLIC DINUCLEOTIDE (C-DI-GMP, C-DI-AMP, AND CGAMP) SIGNALINGS HAVE COME OF AGE TO BE INHIBITED BY SMALL MOLECULES.CHEMICAL COMMUNICATIONS. VOL. 52. ISSUE 60. P. 9327 -9342 121 76% 0
7 LIANG, ZX , (2015) THE EXPANDING ROLES OF C-DI-GMP IN THE BIOSYNTHESIS OF EXOPOLYSACCHARIDES AND SECONDARY METABOLITES.NATURAL PRODUCT REPORTS. VOL. 32. ISSUE 5. P. 663 -683 138 60% 7
8 HENGGE, R , GRUNDLING, A , JENAL, U , RYAN, R , YILDIZ, F , (2016) BACTERIAL SIGNAL TRANSDUCTION BY CYCLIC DI-GMP AND OTHER NUCLEOTIDE SECOND MESSENGERS.JOURNAL OF BACTERIOLOGY. VOL. 198. ISSUE 1. P. 15 -26 61 69% 14
9 ROMLING, U , (2012) CYCLIC DI-GMP, AN ESTABLISHED SECONDARY MESSENGER STILL SPEEDING UP.ENVIRONMENTAL MICROBIOLOGY. VOL. 14. ISSUE 8. P. 1817 -1829 95 77% 32
10 SHANAHAN, CA , STROBEL, SA , (2012) THE BACTERIAL SECOND MESSENGER C-DI-GMP: PROBING INTERACTIONS WITH PROTEIN AND RNA BINDING PARTNERS USING CYCLIC DINUCLEOTIDE ANALOGS.ORGANIC & BIOMOLECULAR CHEMISTRY. VOL. 10. ISSUE 46. P. 9113-9129 90 88% 7

Classes with closest relation at Level 1


Rank Class id link
1 13486 RPOS//CURLI//UVI31
2 4115 BIOFILM//BIOFILM MODEL//BIOFILM STRUCTURE
3 559 QUORUM SENSING//N ACYL HOMOSERINE LACTONE//QUORUM QUENCHING
4 6539 ALGINATE LYASE//ALGINATE//ALGINATE OLIGOSACCHARIDES
5 12199 TYPE IV PILI//TYPE II SECRETION//GENERAL SECRETORY PATHWAY
6 1587 STAPHYLOCOCCUS EPIDERMIDIS//AGR//POLYSACCHARIDE INTERCELLULAR ADHESIN
7 10725 PSEUDOMONAS AERUGINOSA//OE 6710//LIVERPOOL EPIDEMIC STRAIN
8 8265 BIOFILM//ETUD RECH ALIMENTAT ECT//FOOD CONTACT SURFACES
9 10314 EXOU//EXOS//EXOENZYME S
10 21857 T6SS//TYPE VI SECRETION//TYPE VI SECRETION SYSTEM

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