Class information for:
Level 1: CHEMICAL MASTER EQUATION//STOCHASTIC GENE EXPRESSION//TAU LEAPING

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
1585 2582 42.3 77%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
548 2             BMC SYSTEMS BIOLOGY//MATHEMATICAL & COMPUTATIONAL BIOLOGY//BOOLEAN NETWORKS 14655
1585 1                   CHEMICAL MASTER EQUATION//STOCHASTIC GENE EXPRESSION//TAU LEAPING 2582

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CHEMICAL MASTER EQUATION authKW 571386 2% 79% 61
2 STOCHASTIC GENE EXPRESSION authKW 310121 2% 66% 40
3 TAU LEAPING authKW 287328 1% 90% 27
4 STOCHASTIC SIMULATION ALGORITHM authKW 263202 1% 70% 32
5 LINEAR NOISE APPROXIMATION authKW 248825 1% 96% 22
6 GENE EXPRESSION NOISE authKW 184061 1% 65% 24
7 BIOSYST DYNAM address 163499 1% 63% 22
8 STOCHASTIC CHEMICAL KINETICS authKW 157646 1% 67% 20
9 INTRINSIC NOISE authKW 138980 1% 51% 23
10 COMPUTAT SYST BIOL GRP address 71870 1% 20% 31

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Mathematical & Computational Biology 29167 20% 1% 507
2 Physics, Mathematical 3977 12% 0% 297
3 Biology 3189 10% 0% 271
4 Biochemical Research Methods 2431 11% 0% 284
5 Physics, Atomic, Molecular & Chemical 1544 11% 0% 278
6 Biophysics 1488 10% 0% 249
7 Biochemistry & Molecular Biology 1315 22% 0% 575
8 Physics, Fluids & Plasmas 1307 6% 0% 155
9 Cell Biology 938 12% 0% 299
10 Multidisciplinary Sciences 639 3% 0% 75

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOSYST DYNAM 163499 1% 63% 22
2 COMPUTAT SYST BIOL GRP 71870 1% 20% 31
3 CHEM PHYS PL MATH 64447 1% 42% 13
4 INTEGRAT SYST BIOL UNIT 54048 0% 57% 8
5 BIOMED ENGNMATH SCI 35473 0% 100% 3
6 SYNTHSYS EDINBURGH 32841 0% 56% 5
7 BIOCOMPLEX INFORMAT 27700 1% 11% 21
8 ADV COMPUTAT MODELLING 27353 1% 18% 13
9 THEORET BIOL PHYS 27311 2% 5% 45
10 GENET PHYSIOL MOL CELLULAIRE CGPHIMC 27024 0% 57% 4

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PHYSICAL BIOLOGY 58305 2% 8% 64
2 IET SYSTEMS BIOLOGY 27871 1% 8% 28
3 BMC SYSTEMS BIOLOGY 24718 2% 4% 58
4 MOLECULAR SYSTEMS BIOLOGY 20202 1% 5% 36
5 PLOS COMPUTATIONAL BIOLOGY 17930 3% 2% 84
6 MULTISCALE MODELING & SIMULATION 6552 1% 3% 21
7 JOURNAL OF CHEMICAL PHYSICS 6505 9% 0% 222
8 BIOPHYSICAL JOURNAL 5692 4% 1% 98
9 JOURNAL OF THE ROYAL SOCIETY INTERFACE 5483 1% 1% 34
10 JOURNAL OF THEORETICAL BIOLOGY 5413 3% 1% 71

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 CHEMICAL MASTER EQUATION 571386 2% 79% 61 Search CHEMICAL+MASTER+EQUATION Search CHEMICAL+MASTER+EQUATION
2 STOCHASTIC GENE EXPRESSION 310121 2% 66% 40 Search STOCHASTIC+GENE+EXPRESSION Search STOCHASTIC+GENE+EXPRESSION
3 TAU LEAPING 287328 1% 90% 27 Search TAU+LEAPING Search TAU+LEAPING
4 STOCHASTIC SIMULATION ALGORITHM 263202 1% 70% 32 Search STOCHASTIC+SIMULATION+ALGORITHM Search STOCHASTIC+SIMULATION+ALGORITHM
5 LINEAR NOISE APPROXIMATION 248825 1% 96% 22 Search LINEAR+NOISE+APPROXIMATION Search LINEAR+NOISE+APPROXIMATION
6 GENE EXPRESSION NOISE 184061 1% 65% 24 Search GENE+EXPRESSION+NOISE Search GENE+EXPRESSION+NOISE
7 STOCHASTIC CHEMICAL KINETICS 157646 1% 67% 20 Search STOCHASTIC+CHEMICAL+KINETICS Search STOCHASTIC+CHEMICAL+KINETICS
8 INTRINSIC NOISE 138980 1% 51% 23 Search INTRINSIC+NOISE Search INTRINSIC+NOISE
9 STOCHASTIC REACTION KINETICS 70947 0% 100% 6 Search STOCHASTIC+REACTION+KINETICS Search STOCHASTIC+REACTION+KINETICS
10 CHEMICAL LANGEVIN EQUATION 68096 0% 48% 12 Search CHEMICAL+LANGEVIN+EQUATION Search CHEMICAL+LANGEVIN+EQUATION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 GOUTSIAS, J , JENKINSON, G , (2013) MARKOVIAN DYNAMICS ON COMPLEX REACTION NETWORKS.PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS. VOL. 529. ISSUE 2. P. 199 -264 159 60% 30
2 RAJ, A , VAN OUDENAARDEN, A , (2008) NATURE, NURTURE, OR CHANCE: STOCHASTIC GENE EXPRESSION AND ITS CONSEQUENCES.CELL. VOL. 135. ISSUE 2. P. 216-226 65 66% 778
3 GILLESPIE, DT , HELLANDER, A , PETZOLD, LR , (2013) PERSPECTIVE: STOCHASTIC ALGORITHMS FOR CHEMICAL KINETICS.JOURNAL OF CHEMICAL PHYSICS. VOL. 138. ISSUE 17. P. - 62 93% 63
4 PAHLE, J , (2009) BIOCHEMICAL SIMULATIONS: STOCHASTIC, APPROXIMATE STOCHASTIC AND HYBRID APPROACHES.BRIEFINGS IN BIOINFORMATICS. VOL. 10. ISSUE 1. P. 53 -64 77 84% 72
5 KAERN, M , ELSTON, TC , BLAKE, WJ , COLLINS, JJ , (2005) STOCHASTICITY IN GENE EXPRESSION: FROM THEORIES TO PHENOTYPES.NATURE REVIEWS GENETICS. VOL. 6. ISSUE 6. P. 451 -464 65 53% 1103
6 SOLTANI, M , VARGAS-GARCIA, CA , ANTUNES, D , SINGH, A , (2016) INTERCELLULAR VARIABILITY IN PROTEIN LEVELS FROM STOCHASTIC EXPRESSION AND NOISY CELL CYCLE PROCESSES.PLOS COMPUTATIONAL BIOLOGY. VOL. 12. ISSUE 8. P. - 75 76% 0
7 RIECKH, G , TKACIK, G , (2014) NOISE AND INFORMATION TRANSMISSION IN PROMOTERS WITH MULTIPLE INTERNAL STATES.BIOPHYSICAL JOURNAL. VOL. 106. ISSUE 5. P. 1194-1204 66 75% 12
8 SANCHEZ-OSORIO, I , RAMOS, F , MAYORGA, P , DANTAN, E , (2014) FOUNDATIONS FOR MODELING THE DYNAMICS OF GENE REGULATORY NETWORKS: A MULTILEVEL-PERSPECTIVE REVIEW.JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY. VOL. 12. ISSUE 1. P. - 132 41% 1
9 LIU, J , FRANCOIS, JM , CAPP, JP , (2016) USE OF NOISE IN GENE EXPRESSION AS AN EXPERIMENTAL PARAMETER TO TEST PHENOTYPIC EFFECTS.YEAST. VOL. 33. ISSUE 6. P. 209 -216 56 84% 1
10 SINGH, A , SOLTANI, M , (2013) QUANTIFYING INTRINSIC AND EXTRINSIC VARIABILITY IN STOCHASTIC GENE EXPRESSION MODELS.PLOS ONE. VOL. 8. ISSUE 12. P. - 54 96% 5

Classes with closest relation at Level 1


Rank Class id link
1 35643 ALGEBRAIC VIEWPOINT//GEOMETRIC VIEWPOINT//MICROCULTIVATION
2 22276 SIGNALING SYST//INTRACELLULAR DYNAMIC//NF KAPPA B SIGNAL TRANSDUCTION NETWORK
3 7960 SYNTHETIC BIOLOGY//ACS SYNTHETIC BIOLOGY//GENETIC CIRCUITS
4 8965 CHEMICAL REACTION NETWORKS//MASS ACTION KINETICS//ULTRASENSITIVITY
5 23966 GENETIC REGULATORY NETWORKS//GENETIC REGULATORY NETWORKS GRNS//DISCRETE TIME GENETIC REGULATORY NETWORK
6 21530 NETWORK MOTIFS//SUBGRAPH SAMPLING//PROGRAMA GENOM COMPUTAC
7 19974 SINGLE CELL RNA SEQ//SINGLE CELL RNA SEQUENCING//SINGLE CELL TRANSCRIPTOMICS
8 15220 CELLML//SBML//AUCKLAND BIOENGN
9 25559 EQUATION FREE//EQUATION FREE METHODS//MULTISCALE INTEGRATORS
10 19752 NARROW ESCAPE//NONSPECIFIC PROTEIN DNA INTERACTIONS//TARGET SEARCH PROCESS

Go to start page