Class information for:
Level 1: NARROW ESCAPE//NONSPECIFIC PROTEIN DNA INTERACTIONS//TARGET SEARCH PROCESS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
19752 490 40.3 78%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
300 3       PHOTOSYSTEM II//PHOTOSYNTHESIS RESEARCH//REACTION CENTER 41101
2089 2             MACROMOLECULAR CROWDING//LEVY WALK//CORRELATED RANDOM WALK 5197
19752 1                   NARROW ESCAPE//NONSPECIFIC PROTEIN DNA INTERACTIONS//TARGET SEARCH PROCESS 490

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NARROW ESCAPE authKW 538584 2% 79% 11
2 NONSPECIFIC PROTEIN DNA INTERACTIONS authKW 186948 1% 100% 3
3 TARGET SEARCH PROCESS authKW 186948 1% 100% 3
4 MEAN FIRST PASSAGE TIME authKW 177102 4% 15% 19
5 NARROW ESCAPE PROBLEM authKW 140210 1% 75% 3
6 NEUMANN GREENS FUNCTION authKW 140210 1% 75% 3
7 ASYMPTOTIC ANALYSIS OF PDES authKW 124632 0% 100% 2
8 DNA SEARCH authKW 124632 0% 100% 2
9 GAUSS CONSTANT authKW 124632 0% 100% 2
10 INTERMITTENT SEARCH STRATEGIES authKW 124632 0% 100% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Physics, Mathematical 3491 24% 0% 117
2 Physics, Fluids & Plasmas 1148 12% 0% 60
3 Biophysics 701 14% 0% 71
4 Biochemistry & Molecular Biology 569 31% 0% 151
5 Physics, Multidisciplinary 249 12% 0% 58
6 Mathematical & Computational Biology 232 4% 0% 21
7 Physics, Atomic, Molecular & Chemical 202 9% 0% 45
8 Chemistry, Physical 128 14% 0% 67
9 Mathematics, Applied 66 6% 0% 29
10 Mathematics, Interdisciplinary Applications 45 3% 0% 13

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MA1 124632 0% 100% 2
2 MUSEUM HIST NATU565 124632 0% 100% 2
3 GRP PL MATH COMPUTAT BIOL 99701 1% 40% 4
4 BIOL NETWORKS GRP 62316 0% 100% 1
5 CASE COURIER 121 62316 0% 100% 1
6 FUNCT IMAGING TRANSCRIPTIBENS 62316 0% 100% 1
7 GRENOBLE LITEN DTNM L2T 62316 0% 100% 1
8 JEAN PENIN 62316 0% 100% 1
9 JEAN PERRIN FRE 3231 62316 0% 100% 1
10 JUNIOR FELLOW PROGRAM 62316 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MULTISCALE MODELING & SIMULATION 11321 2% 2% 12
2 PHYSICAL REVIEW E 4185 12% 0% 60
3 BIOPHYSICAL JOURNAL 3886 7% 0% 35
4 JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL 2890 4% 0% 20
5 PHYSICAL BIOLOGY 2694 1% 1% 6
6 JOURNAL OF STATISTICAL PHYSICS 2006 3% 0% 16
7 EUROPEAN JOURNAL OF APPLIED MATHEMATICS 1526 1% 1% 4
8 JOURNAL OF BIOLOGICAL PHYSICS 1336 1% 1% 4
9 NUCLEIC ACIDS RESEARCH 1201 6% 0% 28
10 SIAM JOURNAL ON APPLIED MATHEMATICS 1143 2% 0% 8

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 NARROW ESCAPE 538584 2% 79% 11 Search NARROW+ESCAPE Search NARROW+ESCAPE
2 NONSPECIFIC PROTEIN DNA INTERACTIONS 186948 1% 100% 3 Search NONSPECIFIC+PROTEIN+DNA+INTERACTIONS Search NONSPECIFIC+PROTEIN+DNA+INTERACTIONS
3 TARGET SEARCH PROCESS 186948 1% 100% 3 Search TARGET+SEARCH+PROCESS Search TARGET+SEARCH+PROCESS
4 MEAN FIRST PASSAGE TIME 177102 4% 15% 19 Search MEAN+FIRST+PASSAGE+TIME Search MEAN+FIRST+PASSAGE+TIME
5 NARROW ESCAPE PROBLEM 140210 1% 75% 3 Search NARROW+ESCAPE+PROBLEM Search NARROW+ESCAPE+PROBLEM
6 NEUMANN GREENS FUNCTION 140210 1% 75% 3 Search NEUMANN+GREENS+FUNCTION Search NEUMANN+GREENS+FUNCTION
7 ASYMPTOTIC ANALYSIS OF PDES 124632 0% 100% 2 Search ASYMPTOTIC+ANALYSIS+OF+PDES Search ASYMPTOTIC+ANALYSIS+OF+PDES
8 DNA SEARCH 124632 0% 100% 2 Search DNA+SEARCH Search DNA+SEARCH
9 GAUSS CONSTANT 124632 0% 100% 2 Search GAUSS+CONSTANT Search GAUSS+CONSTANT
10 INTERMITTENT SEARCH STRATEGIES 124632 0% 100% 2 Search INTERMITTENT+SEARCH+STRATEGIES Search INTERMITTENT+SEARCH+STRATEGIES

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 TABAKA, M , BURDZY, K , HOLYST, R , (2015) METHOD FOR THE ANALYSIS OF CONTRIBUTION OF SLIDING AND HOPPING TO A FACILITATED DIFFUSION OF DNA-BINDING PROTEIN: APPLICATION TO IN VIVO DATA.PHYSICAL REVIEW E. VOL. 92. ISSUE 2. P. - 59 92% 1
2 VEKSLER, A , KOLOMEISKY, AB , (2013) SPEED-SELECTIVITY PARADOX IN THE PROTEIN SEARCH FOR TARGETS ON DNA: IS IT REAL OR NOT?.JOURNAL OF PHYSICAL CHEMISTRY B. VOL. 117. ISSUE 42. P. 12695-12701 48 87% 17
3 NIRANJANI, G , MURUGAN, R , (2016) GENERALIZED THEORY ON THE MECHANISM OF SITE-SPECIFIC DNA-PROTEIN INTERACTIONS.JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT. VOL. . ISSUE . P. - 49 83% 0
4 KOLOMEISKY, AB , (2011) PHYSICS OF PROTEIN-DNA INTERACTIONS: MECHANISMS OF FACILITATED TARGET SEARCH.PHYSICAL CHEMISTRY CHEMICAL PHYSICS. VOL. 13. ISSUE 6. P. 2088 -2095 40 85% 64
5 MAHMUTOVIC, A , BERG, OG , ELF, J , (2015) WHAT MATTERS FOR LAC REPRESSOR SEARCH IN VIVO-SLIDING, HOPPING, INTERSEGMENT TRANSFER, CROWDING ON DNA OR RECOGNITION?.NUCLEIC ACIDS RESEARCH. VOL. 43. ISSUE 7. P. 3454 -3464 39 80% 10
6 MARCOVITZ, A , LEVY, Y , (2013) OBSTACLES MAY FACILITATE AND DIRECT DNA SEARCH BY PROTEINS.BIOPHYSICAL JOURNAL. VOL. 104. ISSUE 9. P. 2042-2050 40 83% 24
7 BAUER, M , RASMUSSEN, ES , LOMHOLT, MA , METZLER, R , (2015) REAL SEQUENCE EFFECTS ON THE SEARCH DYNAMICS OF TRANSCRIPTION FACTORS ON DNA.SCIENTIFIC REPORTS. VOL. 5. ISSUE . P. - 39 75% 12
8 SHEINMAN, M , BENICHOU, O , KAFRI, Y , VOITURIEZ, R , (2012) CLASSES OF FAST AND SPECIFIC SEARCH MECHANISMS FOR PROTEINS ON DNA.REPORTS ON PROGRESS IN PHYSICS. VOL. 75. ISSUE 2. P. - 58 53% 46
9 LIU, L , LUO, KF , (2015) DNA-BINDING PROTEIN SEARCHES FOR ITS TARGET: NON-MONOTONIC DEPENDENCE OF THE SEARCH TIME ON THE DENSITY OF ROADBLOCKS BOUND ON THE DNA CHAIN.JOURNAL OF CHEMICAL PHYSICS. VOL. 142. ISSUE 12. P. - 35 95% 2
10 KREPEL, D , GOMEZ, D , KLUMPP, S , LEVY, Y , (2016) MECHANISM OF FACILITATED DIFFUSION DURING A DNA SEARCH IN CROWDED ENVIRONMENTS.JOURNAL OF PHYSICAL CHEMISTRY B. VOL. 120. ISSUE 43. P. 11113 -11122 46 70% 0

Classes with closest relation at Level 1


Rank Class id link
1 19794 ELECTROSTATIC RATE ENHANCEMENT//ELECTROSTATIC STEERING//WEIGHTED ENSEMBLE BROWNIAN DYNAMICS
2 12494 LEVY WALK//ANIMAL MOVEMENT//CORRELATED RANDOM WALK
3 6241 LAC REPRESSOR//TRP REPRESSOR//LACTOSE REPRESSOR
4 27495 UM SYLVESTER BRAMAN FAMILY BREAST CANC//GCN4P//DNA PROMOTER ELEMENTS TRE AND CRE
5 26801 MOLECULAR TRAFFIC CONTROL//SINGLE FILE DIFFUSION//1 D SYSTEM
6 1526 ANOMALOUS DIFFUSION//HUGO STEINHAUS//CONTINUOUS TIME RANDOM WALK
7 6536 MAGNETIC TWEEZERS//BMSE PROGRAM//BIONANOSCI
8 1585 CHEMICAL MASTER EQUATION//STOCHASTIC GENE EXPRESSION//TAU LEAPING
9 11355 MACROMOLECULAR CROWDING//THERMODYNAMIC NONIDEALITY//IN CELL NMR
10 36364 INVERTED COLLOIDAL CRYSTAL//TATVHL PEPTIDE//NEURON GROWTH FACTOR

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