Class information for:
Level 1: RETROTRANSPOSON//LTR RETROTRANSPOSON//TRANSPOSABLE ELEMENTS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
6470 1480 48.1 85%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
79 3       AGRONOMY//CROP SCIENCE//THEORETICAL AND APPLIED GENETICS 80349
2094 2             TRANSPOSABLE ELEMENTS//RETROTRANSPOSON//LTR RETROTRANSPOSON 5175
6470 1                   RETROTRANSPOSON//LTR RETROTRANSPOSON//TRANSPOSABLE ELEMENTS 1480

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 RETROTRANSPOSON authKW 837343 12% 23% 180
2 LTR RETROTRANSPOSON authKW 675618 4% 50% 65
3 TRANSPOSABLE ELEMENTS authKW 494466 12% 13% 181
4 TY1 COPIA authKW 444612 2% 86% 25
5 COPIA authKW 414201 2% 63% 32
6 HELITRON authKW 348469 2% 68% 25
7 MTT BI PLANT GENOM address 330696 2% 70% 23
8 RETROTRANSPOSONS authKW 328062 5% 22% 73
9 TY3 GYPSY authKW 313794 1% 89% 17
10 TY1 COPIA RETROTRANSPOSONS authKW 192017 1% 85% 11

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Genetics & Heredity 27770 56% 0% 835
2 Plant Sciences 5916 28% 0% 421
3 Evolutionary Biology 3321 10% 0% 151
4 Biochemistry & Molecular Biology 2793 38% 0% 559
5 Biotechnology & Applied Microbiology 2072 17% 0% 250
6 Horticulture 1559 6% 0% 82
7 Agronomy 544 6% 0% 84
8 Mathematical & Computational Biology 417 3% 0% 50
9 Biochemical Research Methods 157 4% 0% 65
10 Cell Biology 54 5% 0% 78

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MTT BI PLANT GENOM 330696 2% 70% 23
2 ARIZONA GENOM 77915 2% 16% 23
3 MISSISSIPPI GENOME EXPLORAT 57302 0% 56% 5
4 ARIZONA GENOMICS 41261 0% 100% 2
5 BIOTECHVANA 41261 0% 100% 2
6 IRD UMR DIADE 41261 0% 100% 2
7 PLANT GENOM BIOTECHNOL FOOD 41257 0% 50% 4
8 VIIKKI BIO 36861 2% 6% 29
9 KARYOBIOL GRP 35358 0% 29% 6
10 PLANT GENOME INITIAT RUTGERS 30942 0% 50% 3

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOBILE DNA 91108 2% 17% 26
2 MOLECULAR GENETICS AND GENOMICS 38770 4% 3% 61
3 GENOME BIOLOGY AND EVOLUTION 11104 2% 2% 27
4 MOLECULAR BIOLOGY AND EVOLUTION 9559 3% 1% 51
5 GENETICA 8959 2% 1% 36
6 GENOME 8600 3% 1% 41
7 PLANT MOLECULAR BIOLOGY 8586 4% 1% 53
8 PLANT JOURNAL 8566 4% 1% 55
9 BIOTECHFORUM ( BTF ) 8119 2% 1% 32
10 BMC GENOMICS 6214 4% 1% 54

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 RETROTRANSPOSON 837343 12% 23% 180 Search RETROTRANSPOSON Search RETROTRANSPOSON
2 LTR RETROTRANSPOSON 675618 4% 50% 65 Search LTR+RETROTRANSPOSON Search LTR+RETROTRANSPOSON
3 TRANSPOSABLE ELEMENTS 494466 12% 13% 181 Search TRANSPOSABLE+ELEMENTS Search TRANSPOSABLE+ELEMENTS
4 TY1 COPIA 444612 2% 86% 25 Search TY1+COPIA Search TY1+COPIA
5 COPIA 414201 2% 63% 32 Search COPIA Search COPIA
6 HELITRON 348469 2% 68% 25 Search HELITRON Search HELITRON
7 RETROTRANSPOSONS 328062 5% 22% 73 Search RETROTRANSPOSONS Search RETROTRANSPOSONS
8 TY3 GYPSY 313794 1% 89% 17 Search TY3+GYPSY Search TY3+GYPSY
9 TY1 COPIA RETROTRANSPOSONS 192017 1% 85% 11 Search TY1+COPIA+RETROTRANSPOSONS Search TY1+COPIA+RETROTRANSPOSONS
10 SSAP 182102 1% 55% 16 Search SSAP Search SSAP

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 KUMAR, A , BENNETZEN, JL , (1999) PLANT RETROTRANSPOSONS.ANNUAL REVIEW OF GENETICS. VOL. 33. ISSUE . P. 479 -532 108 56% 656
2 VITTE, C , PANAUD, O , (2005) LTR RETROTRANSPOSONS AND FLOWERING PLANT GENOME SIZE: EMERGENCE OF THE INCREASE/DECREASE MODEL.CYTOGENETIC AND GENOME RESEARCH. VOL. 110. ISSUE 1-4. P. 91 -107 99 68% 134
3 RAJPUT, MK , (2015) RETROTRANSPOSONS: THE INTRINSIC GENOMIC EVOLUTIONIST.GENES & GENOMICS. VOL. 37. ISSUE 2. P. 113 -123 81 69% 1
4 GRANDBASTIEN, MA , (2015) LTR RETROTRANSPOSONS, HANDY HITCHHIKERS OF PLANT REGULATION AND STRESS RESPONSE.BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. VOL. 1849. ISSUE 4. P. 403 -416 88 49% 17
5 TODOROVSKA, E , (2007) RETROTRANSPOSONS AND THEIR ROLE IN PLANT - GENOME EVOLUTION.BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT. VOL. 21. ISSUE 3. P. 294-305 74 87% 14
6 NEGI, P , RAI, AN , SUPRASANNA, P , (2016) MOVING THROUGH THE STRESSED GENOME: EMERGING REGULATORY ROLES FOR TRANSPOSONS IN PLANT STRESS RESPONSE.FRONTIERS IN PLANT SCIENCE. VOL. 7. ISSUE . P. - 90 50% 0
7 FATTASH, I , ROOKE, R , WONG, A , HUI, C , LUU, T , BHARDWAJ, P , YANG, GJ , (2013) MINIATURE INVERTED-REPEAT TRANSPOSABLE ELEMENTS: DISCOVERY, DISTRIBUTION, AND ACTIVITY.GENOME. VOL. 56. ISSUE 9. P. 475 -486 80 50% 15
8 FESCHOTTE, C , JIANG, N , WESSLER, SR , (2002) PLANT TRANSPOSABLE ELEMENTS: WHERE GENETICS MEETS GENOMICS.NATURE REVIEWS GENETICS. VOL. 3. ISSUE 5. P. 329 -341 57 55% 464
9 KALENDAR, R , FLAVELL, AJ , ELLIS, THN , SJAKSTE, T , MOISY, C , SCHULMAN, AH , (2011) ANALYSIS OF PLANT DIVERSITY WITH RETROTRANSPOSON-BASED MOLECULAR MARKERS.HEREDITY. VOL. 106. ISSUE 4. P. 520 -530 55 54% 85
10 GONZALEZ, LG , DEYHOLOS, MK , (2012) IDENTIFICATION, CHARACTERIZATION AND DISTRIBUTION OF TRANSPOSABLE ELEMENTS IN THE FLAX (LINUM USITATISSIMUM L.) GENOME.BMC GENOMICS. VOL. 13. ISSUE . P. - 64 57% 5

Classes with closest relation at Level 1


Rank Class id link
1 7239 TRANSPOSON TAGGING//AC DS//GENE TAGGING
2 7721 PACHYTENE CHROMOSOME//CENTROMERE//CENH3
3 17572 TY1//SECT EUKARYOT TRANSPOSABLE ELEMENTS//TY ELEMENTS
4 16632 BRACHYPODIUM//BIBAC//BRACHYPODIUM DISTACHYON
5 2782 P ELEMENT//HYBRID DYSGENESIS//TRANSPOSABLE ELEMENTS
6 4373 MSAP//RDDM//RNA DIRECTED DNA METHYLATION
7 1636 SINE//LINE 1//BIOL COMPUTAT VISUALIZAT
8 9628 MARINER//SLEEPING BEAUTY//TRANSPOSON
9 9608 GENOME SIZE//C VALUE//NUCLEAR DNA CONTENT
10 6967 POLYPLOIDY//ALLOPOLYPLOIDY//AUTOPOLYPLOIDY

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