Class information for:
Level 1: POISSON BOLTZMANN EQUATION//POISSON BOLTZMANN//CONTINUUM ELECTROSTATICS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
4443 1784 51.6 75%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
219 3       PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN FOLDING//PROTEIN STRUCTURE PREDICTION 50409
260 2             PROTEIN FOLDING//JOURNAL OF CHEMICAL THEORY AND COMPUTATION//JOURNAL OF COMPUTATIONAL CHEMISTRY 19582
4443 1                   POISSON BOLTZMANN EQUATION//POISSON BOLTZMANN//CONTINUUM ELECTROSTATICS 1784

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 POISSON BOLTZMANN EQUATION authKW 362651 5% 26% 83
2 POISSON BOLTZMANN authKW 299761 3% 31% 56
3 CONTINUUM ELECTROSTATICS authKW 246644 2% 36% 40
4 IMPLICIT SOLVENT MODEL authKW 226825 1% 51% 26
5 PROTEIN ELECTROSTATICS authKW 221800 2% 41% 32
6 ELECTROSTATICS authKW 215122 7% 11% 117
7 IMPLICIT SOLVENT authKW 169224 2% 33% 30
8 MOLECULAR SURFACE authKW 163442 2% 29% 33
9 GENERALIZED BORN authKW 156265 1% 42% 22
10 BIOMOLECULAR ELECTROSTATICS authKW 121701 0% 89% 8

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Biophysics 5526 21% 0% 370
2 Chemistry, Physical 3590 31% 0% 558
3 Physics, Atomic, Molecular & Chemical 2634 16% 0% 287
4 Biochemistry & Molecular Biology 2447 33% 0% 589
5 Chemistry, Multidisciplinary 954 17% 0% 310
6 Computer Science, Interdisciplinary Applications 926 7% 0% 120
7 Physics, Mathematical 461 5% 0% 92
8 Mathematical & Computational Biology 377 3% 0% 53
9 Biochemical Research Methods 187 4% 0% 78
10 Mathematics, Interdisciplinary Applications 55 2% 0% 31

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CHEM PHYS MAT PHYS PROGRAM 51343 0% 100% 3
2 JIUYUAN MOL DESIGN 51343 0% 100% 3
3 PHYS J 419 38506 0% 75% 3
4 COMP SCI NUMER COMP GRP 34229 0% 100% 2
5 COMPUTAT CHEM MODELING SIMULAT GCO 34229 0% 100% 2
6 MODELING SIMULAT GCO 34229 0% 100% 2
7 PL MATH PLICAT GRP 34229 0% 100% 2
8 COMP SCI PHYS 30421 0% 44% 4
9 BEIDA JIUYUAN MOL DESIGN 25669 0% 50% 3
10 COMPUTAT STAT ANALYT 23763 0% 28% 5

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF COMPUTATIONAL CHEMISTRY 88578 10% 3% 178
2 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 37255 7% 2% 118
3 JOURNAL OF CHEMICAL THEORY AND COMPUTATION 28778 5% 2% 88
4 COMMUNICATIONS IN COMPUTATIONAL PHYSICS 9534 1% 2% 26
5 JOURNAL OF PHYSICAL CHEMISTRY B 7871 8% 0% 134
6 BIOPHYSICAL JOURNAL 4972 4% 0% 76
7 BIOPHYSICAL CHEMISTRY 4894 2% 1% 35
8 PROTEIN SCIENCE 4523 2% 1% 41
9 JOURNAL OF MOLECULAR GRAPHICS & MODELLING 4008 1% 1% 21
10 JOURNAL OF MOLECULAR GRAPHICS 2789 0% 3% 6

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 POISSON BOLTZMANN EQUATION 362651 5% 26% 83 Search POISSON+BOLTZMANN+EQUATION Search POISSON+BOLTZMANN+EQUATION
2 POISSON BOLTZMANN 299761 3% 31% 56 Search POISSON+BOLTZMANN Search POISSON+BOLTZMANN
3 CONTINUUM ELECTROSTATICS 246644 2% 36% 40 Search CONTINUUM+ELECTROSTATICS Search CONTINUUM+ELECTROSTATICS
4 IMPLICIT SOLVENT MODEL 226825 1% 51% 26 Search IMPLICIT+SOLVENT+MODEL Search IMPLICIT+SOLVENT+MODEL
5 PROTEIN ELECTROSTATICS 221800 2% 41% 32 Search PROTEIN+ELECTROSTATICS Search PROTEIN+ELECTROSTATICS
6 ELECTROSTATICS 215122 7% 11% 117 Search ELECTROSTATICS Search ELECTROSTATICS
7 IMPLICIT SOLVENT 169224 2% 33% 30 Search IMPLICIT+SOLVENT Search IMPLICIT+SOLVENT
8 MOLECULAR SURFACE 163442 2% 29% 33 Search MOLECULAR+SURFACE Search MOLECULAR+SURFACE
9 GENERALIZED BORN 156265 1% 42% 22 Search GENERALIZED+BORN Search GENERALIZED+BORN
10 BIOMOLECULAR ELECTROSTATICS 121701 0% 89% 8 Search BIOMOLECULAR+ELECTROSTATICS Search BIOMOLECULAR+ELECTROSTATICS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 ALEXOV, E , MEHLER, EL , BAKER, N , BAPTISTA, AM , HUANG, Y , MILLETTI, F , NIELSEN, JE , FARRELL, D , CARSTENSEN, T , OLSSON, MHM , ET AL (2011) PROGRESS IN THE PREDICTION OF PK(A) VALUES IN PROTEINS.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 79. ISSUE 12. P. 3260-3275 96 87% 68
2 XIAO, L , WANG, CH , YE, X , LUO, R , (2016) CHARGE CENTRAL INTERPRETATION OF THE FULL NONLINEAR PB EQUATION: IMPLICATIONS FOR ACCURATE AND SCALABLE MODELING OF SOLVATION INTERACTIONS.JOURNAL OF PHYSICAL CHEMISTRY B. VOL. 120. ISSUE 33. P. 8707 -8721 81 91% 0
3 XIAO, L , WANG, CH , LUO, R , (2014) RECENT PROGRESS IN ADAPTING POISSON-BOLTZMANN METHODS TO MOLECULAR SIMULATIONS.JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY. VOL. 13. ISSUE 3. P. - 75 91% 4
4 WANG, J , CAI, Q , XIANG, Y , LUO, R , (2012) REDUCING GRID DEPENDENCE IN FINITE-DIFFERENCE POISSON-BOLTZMANN CALCULATIONS.JOURNAL OF CHEMICAL THEORY AND COMPUTATION. VOL. 8. ISSUE 8. P. 2741 -2751 71 95% 4
5 XIAO, L , CAI, Q , YE, X , WANG, J , LUO, R , (2013) ELECTROSTATIC FORCES IN THE POISSON-BOLTZMANN SYSTEMS.JOURNAL OF CHEMICAL PHYSICS. VOL. 139. ISSUE 9. P. - 72 91% 3
6 YE, X , WANG, J , LUO, R , (2010) A REVISED DENSITY FUNCTION FOR MOLECULAR SURFACE CALCULATION IN CONTINUUM SOLVENT MODELS.JOURNAL OF CHEMICAL THEORY AND COMPUTATION. VOL. 6. ISSUE 4. P. 1157 -1169 68 94% 6
7 CAI, Q , YE, X , LUO, R , (2012) DIELECTRIC PRESSURE IN CONTINUUM ELECTROSTATIC SOLVATION OF BIOMOLECULES.PHYSICAL CHEMISTRY CHEMICAL PHYSICS. VOL. 14. ISSUE 45. P. 15917-15925 64 94% 5
8 WANG, CH , WANG, J , CAI, Q , LI, ZL , ZHAO, HK , LUO, R , (2013) EXPLORING ACCURATE POISSON-BOLTZMANN METHODS FOR BIOMOLECULAR SIMULATIONS.COMPUTATIONAL AND THEORETICAL CHEMISTRY. VOL. 1024. ISSUE . P. 34 -44 67 86% 6
9 WANG, CH , NGUYEN, PH , PHAM, K , HUYNH, D , LE, TBN , WANG, HL , REN, PY , LUO, R , (2016) CALCULATING PROTEIN-LIGAND BINDING AFFINITIES WITH MMPBSA: METHOD AND ERROR ANALYSIS.JOURNAL OF COMPUTATIONAL CHEMISTRY. VOL. 37. ISSUE 27. P. 2436 -2446 81 63% 1
10 ONUFRIEV, AV , AGUILAR, B , (2014) ACCURACY OF CONTINUUM ELECTROSTATIC CALCULATIONS BASED ON THREE COMMON DIELECTRIC BOUNDARY DEFINITIONS.JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY. VOL. 13. ISSUE 3. P. - 73 78% 1

Classes with closest relation at Level 1


Rank Class id link
1 5802 THERMODYNAMIC INTEGRATION//FREE ENERGY CALCULATIONS//FREE ENERGY PERTURBATION
2 13863 EWALD SUMMATION//EWALD SUM//EWALD METHOD
3 19794 ELECTROSTATIC RATE ENHANCEMENT//ELECTROSTATIC STEERING//WEIGHTED ENSEMBLE BROWNIAN DYNAMICS
4 7776 POLARIZABLE CONTINUUM MODEL//SOLVATION ANALYSIS//POLARIZABLE EMBEDDING
5 23925 WATERMAP//CAMBRIDGE MOL THER EUT PROGRAMME//PROTEIN HYDRATION
6 32326 MOLECULAR VISUALIZATION//EQUIPE ALICE//POINT BASED DATA
7 15175 STAPHYLOCOCCAL NUCLEASE//THERMODYNAMIC MOLECULAR SWITCH//T4 LYSOZYME
8 13291 COMPUTATIONAL PROTEIN DESIGN//PROTEIN DESIGN//DEAD END ELIMINATION
9 14628 PKA PREDICTION//ELECTRODE POTENTIALS//CPCM
10 12643 PSYCHROPHILE//COLD ADAPTATION//THERMOPHILIC PROTEIN

Go to start page