Class information for:
Level 1: MOLECULAR PLANT-MICROBE INTERACTIONS//HARPIN//XANTHOMONAS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
3976 1871 50.2 80%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
243 3       INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY//MICROBIOLOGY//STREPTOMYCES 47319
1260 2             RALSTONIA SOLANACEARUM//BACTERIAL WILT//FIRE BLIGHT 8828
3976 1                   MOLECULAR PLANT-MICROBE INTERACTIONS//HARPIN//XANTHOMONAS 1871

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR PLANT-MICROBE INTERACTIONS journal 352715 14% 8% 271
2 HARPIN authKW 258916 2% 55% 29
3 XANTHOMONAS authKW 197007 3% 21% 57
4 HRP GENES authKW 196353 1% 63% 19
5 TYPE III EFFECTOR authKW 184079 1% 59% 19
6 TAL EFFECTOR authKW 141878 1% 43% 20
7 OLIVE KNOT DISEASE authKW 131631 1% 73% 11
8 TYPE III EFFECTORS authKW 131316 1% 62% 13
9 CITRUS CANKER authKW 127031 2% 27% 29
10 AVRBS3 authKW 125523 1% 77% 10

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Plant Sciences 24428 50% 0% 935
2 Microbiology 12722 35% 0% 651
3 Biotechnology & Applied Microbiology 6498 26% 0% 480
4 Biochemistry & Molecular Biology 2752 34% 0% 636
5 Genetics & Heredity 164 5% 0% 100
6 Agronomy 161 3% 0% 58
7 Horticulture 117 2% 0% 29
8 Parasitiology 74 2% 0% 29
9 Cell Biology 53 5% 0% 92
10 Agriculture, Multidisciplinary 41 1% 0% 26

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PLANT PATHOL 99584 18% 2% 334
2 ABT PROTEOM METABOLOMFOR 97912 0% 100% 6
3 GUANGXI SUBTROP BIO OURCES CONSERVAT 97888 1% 33% 18
4 MINIST EDUC MICROBIAL PLANT GENET ENGN 93797 1% 25% 23
5 GIFU UNITED AGR SCI 81593 0% 100% 5
6 URBAN SOUTH 67992 0% 83% 5
7 MONITORING MANAGEMENT PLANT PATHOGENS 65274 0% 100% 4
8 MONITORING MANAGEMENT PLANT PESTS DIS 65274 0% 100% 4
9 URBAN S 65274 0% 100% 4
10 PATOL VEGETALE MOL 58742 0% 60% 6

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR PLANT-MICROBE INTERACTIONS 352715 14% 8% 271
2 MOLECULAR PLANT PATHOLOGY 118433 5% 8% 93
3 PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY 16252 2% 2% 43
4 ANNUAL REVIEW OF PHYTOPATHOLOGY 12895 1% 3% 25
5 JOURNAL OF BACTERIOLOGY 9363 7% 0% 139
6 MOLECULAR MICROBIOLOGY 4697 3% 1% 59
7 PHYTOPATHOLOGY 4451 2% 1% 46
8 PLANT JOURNAL 3200 2% 1% 38
9 PLANT PATHOLOGY JOURNAL 2718 1% 2% 10
10 JOURNAL OF GENERAL PLANT PATHOLOGY 2364 0% 2% 9

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 HARPIN 258916 2% 55% 29 Search HARPIN Search HARPIN
2 XANTHOMONAS 197007 3% 21% 57 Search XANTHOMONAS Search XANTHOMONAS
3 HRP GENES 196353 1% 63% 19 Search HRP+GENES Search HRP+GENES
4 TYPE III EFFECTOR 184079 1% 59% 19 Search TYPE+III+EFFECTOR Search TYPE+III+EFFECTOR
5 TAL EFFECTOR 141878 1% 43% 20 Search TAL+EFFECTOR Search TAL+EFFECTOR
6 OLIVE KNOT DISEASE 131631 1% 73% 11 Search OLIVE+KNOT+DISEASE Search OLIVE+KNOT+DISEASE
7 TYPE III EFFECTORS 131316 1% 62% 13 Search TYPE+III+EFFECTORS Search TYPE+III+EFFECTORS
8 CITRUS CANKER 127031 2% 27% 29 Search CITRUS+CANKER Search CITRUS+CANKER
9 AVRBS3 125523 1% 77% 10 Search AVRBS3 Search AVRBS3
10 XANTHOMONAS ORYZAE PV ORYZAE 113586 2% 20% 34 Search XANTHOMONAS+ORYZAE+PV+ORYZAE Search XANTHOMONAS+ORYZAE+PV+ORYZAE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 BONAS, U , BUTTNER, D , (2010) REGULATION AND SECRETION OF XANTHOMONAS VIRULENCE FACTORS.FEMS MICROBIOLOGY REVIEWS. VOL. 34. ISSUE 2. P. 107 -133 170 69% 118
2 GURLEBECK, D , THIEME, F , BONAS, U , (2006) TYPE III EFFECTOR PROTEINS FROM THE PLANT PATHOGEN XANTHOMONAS AND THEIR ROLE IN THE INTERACTION WITH THE HOST PLANT.JOURNAL OF PLANT PHYSIOLOGY. VOL. 163. ISSUE 3. P. 233-255 119 63% 109
3 WHITE, FF , POTNIS, N , JONES, JB , KOEBNIK, R , (2009) THE TYPE III EFFECTORS OF XANTHOMONAS.MOLECULAR PLANT PATHOLOGY. VOL. 10. ISSUE 6. P. 749 -766 88 69% 103
4 CHOI, MS , KIM, W , LEE, C , OH, CS , (2013) HARPINS, MULTIFUNCTIONAL PROTEINS SECRETED BY GRAM-NEGATIVE PLANT-PATHOGENIC BACTERIA.MOLECULAR PLANT-MICROBE INTERACTIONS. VOL. 26. ISSUE 10. P. 1115-1122 64 86% 25
5 ALFANO, JR , COLLMER, A , (2004) TYPE III SECRETION SYSTEM EFFECTOR PROTEINS: DOUBLE AGENTS IN BACTERIAL DISEASE AND PLANT DEFENSE.ANNUAL REVIEW OF PHYTOPATHOLOGY. VOL. 42. ISSUE . P. 385-414 90 55% 418
6 RYAN, RP , VORHOLTER, FJ , POTNIS, N , JONES, JB , VAN SLUYS, MA , BOGDANOVE, AJ , DOW, JM , (2011) PATHOGENOMICS OF XANTHOMONAS: UNDERSTANDING BACTERIUM-PLANT INTERACTIONS.NATURE REVIEWS MICROBIOLOGY. VOL. 9. ISSUE 5. P. 344 -355 67 72% 95
7 MANSFIELD, JW , (2009) FROM BACTERIAL AVIRULENCE GENES TO EFFECTOR FUNCTIONS VIA THE HRP DELIVERY SYSTEM: AN OVERVIEW OF 25 YEARS OF PROGRESS IN OUR UNDERSTANDING OF PLANT INNATE IMMUNITY.MOLECULAR PLANT PATHOLOGY. VOL. 10. ISSUE 6. P. 721 -734 86 69% 49
8 TAMPAKAKI, AP , SKANDALIS, N , GAZI, AD , BASTAKI, MN , SARRIS, PF , CHAROVA, SN , KOKKINIDIS, M , PANOPOULOS, NJ , (2010) PLAYING THE "HARP": EVOLUTION OF OUR UNDERSTANDING OF HRP/HRC GENES.ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 48. VOL. 48. ISSUE . P. 347 -370 87 63% 35
9 SCHULZE, S , KAY, S , BUTTNER, D , EGLER, M , ESCHEN-LIPPOLD, L , HAUSE, G , KRUGER, A , LEE, J , MULLER, O , SCHEEL, D , ET AL (2012) ANALYSIS OF NEW TYPE III EFFECTORS FROM XANTHOMONAS UNCOVERS XOPB AND XOPS AS SUPPRESSORS OF PLANT IMMUNITY.NEW PHYTOLOGIST. VOL. 195. ISSUE 4. P. 894-911 66 65% 20
10 BALTRUS, DA , NISHIMURA, MT , ROMANCHUK, A , CHANG, JH , MUKHTAR, MS , CHERKIS, K , ROACH, J , GRANT, SR , JONES, CD , DANGL, JL , (2011) DYNAMIC EVOLUTION OF PATHOGENICITY REVEALED BY SEQUENCING AND COMPARATIVE GENOMICS OF 19 PSEUDOMONAS SYRINGAE ISOLATES.PLOS PATHOGENS. VOL. 7. ISSUE 7. P. - 54 60% 129

Classes with closest relation at Level 1


Rank Class id link
1 10991 PSEUDOMONAS SYRINGAE PV SYRINGAE//BACTERIAL CANKER//SYRINGOMYCIN
2 12560 RECEPTOR LIKE KINASE//FLG22//RLK
3 4879 BACTERIAL FRUIT BLOTCH//BACTERIAL SPOT//BLACK ROT
4 4945 NBS LRR//CLADOSPORIUM FULVUM//RESISTANCE GENE ANALOGS
5 13153 RALSTONIA SOLANACEARUM//BACTERIAL WILT//PSEUDOMONAS SOLANACEARUM
6 13905 FIRE BLIGHT//ERWINIA AMYLOVORA//ASIAN PEAR BLIGHT
7 26355 2 7 DIHYDROXYCADALENE//LACINILENE C//R AND AVR GENES
8 4452 YERSINIA//TYPE III SECRETION//MICROBIAL PATHOGENESIS UNIT
9 8245 ERWINIA CHRYSANTHEMI//SOFT ROT//PECTOBACTERIUM
10 11167 ELICITIN//OOMYCETES//CRYPTOGEIN

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