Class information for:
Level 1: PEPTIDE IDENTIFICATION//JOURNAL OF PROTEOME RESEARCH//PROTEIN IDENTIFICATION

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
1508 2620 37.8 86%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
157 3       JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY//BIOCHEMICAL RESEARCH METHODS//INTERNATIONAL JOURNAL OF MASS SPECTROMETRY 61558
370 2             PROTEOMICS//JOURNAL OF PROTEOME RESEARCH//BIOCHEMICAL RESEARCH METHODS 17272
1508 1                   PEPTIDE IDENTIFICATION//JOURNAL OF PROTEOME RESEARCH//PROTEIN IDENTIFICATION 2620

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PEPTIDE IDENTIFICATION authKW 807943 4% 67% 103
2 JOURNAL OF PROTEOME RESEARCH journal 505833 20% 8% 514
3 PROTEIN IDENTIFICATION authKW 453990 5% 27% 144
4 PROTEOGENOMICS authKW 424262 2% 58% 63
5 MISSING PROTEINS authKW 339864 1% 83% 35
6 PROTEIN INFERENCE authKW 291322 1% 100% 25
7 PROTEOMICS journal 259884 14% 6% 357
8 HUMAN PROTEOME PROJECT authKW 249688 1% 71% 30
9 PROTEOMICS STANDARDS INITIATIVE authKW 221405 1% 100% 19
10 SHOTGUN PROTEOMICS authKW 203686 3% 23% 77

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biochemical Research Methods 125945 72% 1% 1890
2 Mathematical & Computational Biology 12472 13% 0% 337
3 Biotechnology & Applied Microbiology 3422 16% 0% 429
4 Chemistry, Analytical 3296 16% 0% 427
5 Spectroscopy 1585 7% 0% 192
6 Biochemistry & Molecular Biology 1224 22% 0% 565
7 Genetics & Heredity 101 4% 0% 107
8 Statistics & Probability 35 1% 0% 38
9 Computer Science, Interdisciplinary Applications 31 2% 0% 42
10 Mathematics, Interdisciplinary Applications 3 1% 0% 19

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTEOME INFORMAT GRP 117728 1% 42% 24
2 EMBL OUTSTN 116656 2% 21% 48
3 MOL SYST BIOL 94669 4% 9% 92
4 MED PROT 90365 3% 12% 66
5 JIM AYERS PRECANC DETECT DIAG 76472 1% 41% 16
6 SYST ENGN COMP SCI PROGRAM 60859 1% 33% 16
7 STRUCT BIOL BIOINFORMAT PROGRAMME 58264 0% 100% 5
8 PROTE SIGNAL TRANSDUCT 56199 1% 12% 39
9 COMPUTAT MASS SPE OMETRY 55480 0% 48% 10
10 BEIJING PROTEOME 50312 1% 11% 38

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF PROTEOME RESEARCH 505833 20% 8% 514
2 PROTEOMICS 259884 14% 6% 357
3 MOLECULAR & CELLULAR PROTEOMICS 179690 8% 7% 218
4 JOURNAL OF PROTEOMICS 42365 4% 4% 98
5 BIOINFORMATICS 26802 6% 1% 157
6 BMC BIOINFORMATICS 16655 4% 1% 104
7 JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 15954 3% 2% 80
8 EXPERT REVIEW OF PROTEOMICS 14270 1% 4% 30
9 PROTEOME SCIENCE 12048 1% 4% 24
10 OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 10341 1% 4% 25

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PEPTIDE IDENTIFICATION 807943 4% 67% 103 Search PEPTIDE+IDENTIFICATION Search PEPTIDE+IDENTIFICATION
2 PROTEIN IDENTIFICATION 453990 5% 27% 144 Search PROTEIN+IDENTIFICATION Search PROTEIN+IDENTIFICATION
3 PROTEOGENOMICS 424262 2% 58% 63 Search PROTEOGENOMICS Search PROTEOGENOMICS
4 MISSING PROTEINS 339864 1% 83% 35 Search MISSING+PROTEINS Search MISSING+PROTEINS
5 PROTEIN INFERENCE 291322 1% 100% 25 Search PROTEIN+INFERENCE Search PROTEIN+INFERENCE
6 HUMAN PROTEOME PROJECT 249688 1% 71% 30 Search HUMAN+PROTEOME+PROJECT Search HUMAN+PROTEOME+PROJECT
7 PROTEOMICS STANDARDS INITIATIVE 221405 1% 100% 19 Search PROTEOMICS+STANDARDS+INITIATIVE Search PROTEOMICS+STANDARDS+INITIATIVE
8 SHOTGUN PROTEOMICS 203686 3% 23% 77 Search SHOTGUN+PROTEOMICS Search SHOTGUN+PROTEOMICS
9 DATABASE SEARCH 187719 3% 23% 70 Search DATABASE+SEARCH Search DATABASE+SEARCH
10 BIOINFORMATICS 179775 12% 5% 302 Search BIOINFORMATICS Search BIOINFORMATICS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 NESVIZHSKII, AI , (2010) A SURVEY OF COMPUTATIONAL METHODS AND ERROR RATE ESTIMATION PROCEDURES FOR PEPTIDE AND PROTEIN IDENTIFICATION IN SHOTGUN PROTEOMICS.JOURNAL OF PROTEOMICS. VOL. 73. ISSUE 11. P. 2092 -2123 213 82% 171
2 VIZCAINO, JA , CSORDAS, A , DEL-TORO, N , DIANES, JA , GRISS, J , LAVIDAS, I , MAYER, G , PEREZ-RIVEROL, Y , REISINGER, F , TERNENT, T , ET AL (2016) 2016 UPDATE OF THE PRIDE DATABASE AND ITS RELATED TOOLS.NUCLEIC ACIDS RESEARCH. VOL. 44. ISSUE D1. P. D447 -D456 36 75% 217
3 COX, J , NEUHAUSER, N , MICHALSKI, A , SCHELTEMA, RA , OLSEN, JV , MANN, M , (2011) ANDROMEDA: A PEPTIDE SEARCH ENGINE INTEGRATED INTO THE MAXQUANT ENVIRONMENT.JOURNAL OF PROTEOME RESEARCH. VOL. 10. ISSUE 4. P. 1794 -1805 48 79% 935
4 ZHANG, YY , FONSLOW, BR , SHAN, B , BAEK, MC , YATES, JR , (2013) PROTEIN ANALYSIS BY SHOTGUN/BOTTOM-UP PROTEOMICS.CHEMICAL REVIEWS. VOL. 113. ISSUE 4. P. 2343 -2394 185 24% 214
5 NESVIZHSKII, AI , VITEK, O , AEBERSOLD, R , (2007) ANALYSIS AND VALIDATION OF PROTEOMIC DATA GENERATED BY TANDEM MASS SPECTROMETRY.NATURE METHODS. VOL. 4. ISSUE 10. P. 787-797 82 78% 310
6 PEREZ-RIVEROL, Y , ALPI, E , WANG, R , HERMJAKOB, H , VIZCAINO, JA , (2015) MAKING PROTEOMICS DATA ACCESSIBLE AND REUSABLE: CURRENT STATE OF PROTEOMICS DATABASES AND REPOSITORIES.PROTEOMICS. VOL. 15. ISSUE 5-6. P. 930 -949 79 73% 22
7 PEREZ-RIVEROL, Y , WANG, R , HERMJAKOB, H , MULLER, M , VESADA, V , VIZCAINO, JA , (2014) OPEN SOURCE LIBRARIES AND FRAMEWORKS FOR MASS SPECTROMETRY BASED PROTEOMICS: A DEVELOPER'S PERSPECTIVE.BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. VOL. 1844. ISSUE 1. P. 63 -76 95 69% 14
8 BLEIN-NICOLAS, M , ZIVY, M , (2016) THOUSAND AND ONE WAYS TO QUANTIFY AND COMPARE PROTEIN ABUNDANCES IN LABEL-FREE BOTTOM-UP PROTEOMICS.BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. VOL. 1864. ISSUE 8. P. 883 -895 73 78% 2
9 FENG, XD , MA, J , CHANG, C , BAI, MZ , ZHU, YP , SHU, KX , (2016) THE APPLICATION AND PROGRESS OF TARGET-DECOY DATABASE SEARCH STRATEGY IN IDENTIFICATION AND QUALITY CONTROL OF TANDEM MASS SPECTROMETRY DATA IN SHOTGUN PROTEOMICS.PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS. VOL. 43. ISSUE 7. P. 661 -672 64 98% 0
10 FORNER, F , FOSTER, LJ , TOPPO, S , (2007) MASS SPECTROMETRY DATA ANALYSIS IN THE PROTEOMICS ERA.CURRENT BIOINFORMATICS. VOL. 2. ISSUE 1. P. 63 -93 128 57% 17

Classes with closest relation at Level 1


Rank Class id link
1 8239 QUANTITATIVE PROTEOMICS//STABLE ISOTOPE LABELING//ISOBARIC TAG
2 9567 TARGETED PROTEOMICS//SELECTED REACTION MONITORING//MULTIPLE REACTION MONITORING
3 6883 PREFRACTIONATION//FASP//SDS REMOVAL
4 4677 PHOSPHOPROTEOMICS//PHOSPHOPEPTIDES//PHOSPHOPEPTIDE ENRICHMENT
5 10709 PEPTIDE FRAGMENTATION//PROTONATED PEPTIDES//JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
6 7355 ION ION REACTIONS//ELECTRON CAPTURE DISSOCIATION//ELECTRON TRANSFER DISSOCIATION
7 13921 METABOLITE ANNOTATION//SCRIPPS METABOL MASS SPE OMETRY//ST S DEV BIOL
8 23215 DEGRADOMICS//LIFE SCI 4 401//N TERMINOMICS
9 37113 PRIMARY HUMAN CELLS//DR 70//CELL TYPE SPECIFIC SIGNATURES
10 24827 METAPROTEOMICS//PROTEIN SIP//SOIL METAPROTEOMICS

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