Class information for:
Level 1: PROT CRYSTALLOG UNIT//T CELL RECEPTOR//PEPTIDE MHC

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
13833 810 49.3 93%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
10 3       IMMUNOLOGY//JOURNAL OF IMMUNOLOGY//IMMUNOL 134299
741 2             ANTIGEN PRESENTATION//IMMUNOLOGY//ANTIGEN PROCESSING 12555
13833 1                   PROT CRYSTALLOG UNIT//T CELL RECEPTOR//PEPTIDE MHC 810

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROT CRYSTALLOG UNIT address 375383 4% 28% 35
2 T CELL RECEPTOR authKW 248104 15% 5% 124
3 PEPTIDE MHC authKW 171337 1% 45% 10
4 PEPTIDE MHC COMPLEXES authKW 157067 1% 83% 5
5 MOL STAT BIOINFORMAT SECT address 150782 1% 67% 6
6 HARPER CANC address 119690 2% 19% 17
7 BIOMED COMP SIMULAT BIOINFORMAT address 113090 0% 100% 3
8 SECT BIOMED COMP SIMULAT BIOINFORMAT address 113090 0% 100% 3
9 T CELL RECEPTOR MIMICS authKW 113090 0% 100% 3
10 MOL IMMUNOL SECT address 108915 2% 17% 17

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Immunology 14976 64% 0% 521
2 Biochemistry & Molecular Biology 1048 32% 0% 261
3 Biochemical Research Methods 165 6% 0% 46
4 Medicine, Research & Experimental 133 6% 0% 48
5 Cell Biology 102 8% 0% 63
6 Biophysics 79 5% 0% 38
7 Mathematical & Computational Biology 26 1% 0% 11
8 Computer Science, Interdisciplinary Applications 9 2% 0% 13
9 Biotechnology & Applied Microbiology 5 3% 0% 22
10 Oncology 0 3% 0% 22

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROT CRYSTALLOG UNIT 375383 4% 28% 35
2 MOL STAT BIOINFORMAT SECT 150782 1% 67% 6
3 HARPER CANC 119690 2% 19% 17
4 BIOMED COMP SIMULAT BIOINFORMAT 113090 0% 100% 3
5 SECT BIOMED COMP SIMULAT BIOINFORMAT 113090 0% 100% 3
6 MOL IMMUNOL SECT 108915 2% 17% 17
7 NEUROIMMUNOL BRANCH 104131 4% 8% 33
8 PROGRAM BIOMOL STRUCT 95010 1% 23% 11
9 HUMAN IMMUN 94236 1% 50% 5
10 SECT BIOSIMULAT BIOINFORMAT 85669 1% 45% 5

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 IMMUNITY 15851 5% 1% 38
2 JOURNAL OF IMMUNOLOGY 8023 13% 0% 107
3 MOLECULAR IMMUNOLOGY 7699 5% 1% 38
4 NATURE IMMUNOLOGY 6142 2% 1% 19
5 EUROPEAN JOURNAL OF IMMUNOLOGY 5515 5% 0% 44
6 CURRENT OPINION IN IMMUNOLOGY 3934 2% 1% 17
7 ANNUAL REVIEW OF IMMUNOLOGY 2783 1% 1% 8
8 JOURNAL OF MOLECULAR BIOLOGY 2166 5% 0% 37
9 JOURNAL OF EXPERIMENTAL MEDICINE 1889 3% 0% 25
10 JOURNAL OF IMMUNOLOGICAL METHODS 1859 3% 0% 22

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 T CELL RECEPTOR 248104 15% 5% 124 Search T+CELL+RECEPTOR Search T+CELL+RECEPTOR
2 PEPTIDE MHC 171337 1% 45% 10 Search PEPTIDE+MHC Search PEPTIDE+MHC
3 PEPTIDE MHC COMPLEXES 157067 1% 83% 5 Search PEPTIDE+MHC+COMPLEXES Search PEPTIDE+MHC+COMPLEXES
4 T CELL RECEPTOR MIMICS 113090 0% 100% 3 Search T+CELL+RECEPTOR+MIMICS Search T+CELL+RECEPTOR+MIMICS
5 V ALPHA DOMAIN 100521 0% 67% 4 Search V+ALPHA+DOMAIN Search V+ALPHA+DOMAIN
6 ANTIGEN RECOGNITION 99919 2% 16% 17 Search ANTIGEN+RECOGNITION Search ANTIGEN+RECOGNITION
7 PEPTIDE MAJOR HISTOCOMPATIBILITY COMPLEX PMHC 75393 0% 100% 2 Search PEPTIDE+MAJOR+HISTOCOMPATIBILITY+COMPLEX+PMHC Search PEPTIDE+MAJOR+HISTOCOMPATIBILITY+COMPLEX+PMHC
8 PEPTIDE MHC CLASS II TCR INTERACTION 75393 0% 100% 2 Search PEPTIDE+MHC+CLASS+II+TCR+INTERACTION Search PEPTIDE+MHC+CLASS+II+TCR+INTERACTION
9 TCR MIMICS 75393 0% 100% 2 Search TCR+MIMICS Search TCR+MIMICS
10 TCR PMHC 75393 0% 100% 2 Search TCR+PMHC Search TCR+PMHC

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 ROSSJOHN, J , GRAS, S , MILES, JJ , TURNER, SJ , GODFREY, DI , MCCLUSKEY, J , (2015) T CELL ANTIGEN RECEPTOR RECOGNITION OF ANTIGEN-PRESENTING MOLECULES.ANNUAL REVIEW OF IMMUNOLOGY VOL 33. VOL. 33. ISSUE . P. 169 -200 87 60% 43
2 ADAMS, JJ , NARAYANAN, S , BIRNBAUM, ME , SIDHU, SS , BLEVINS, SJ , GEE, MH , SIBENER, LV , BAKER, BM , KRANZ, DM , GARCIA, KC , (2016) STRUCTURAL INTERPLAY BETWEEN GERMLINE INTERACTIONS AND ADAPTIVE RECOGNITION DETERMINES THE BANDWIDTH OF TCR-PEPTIDE-MHC CROSS-REACTIVITY.NATURE IMMUNOLOGY. VOL. 17. ISSUE 1. P. 87 -+ 40 78% 11
3 GRAS, S , BURROWS, SR , TURNER, SJ , SEWELL, AK , MCCLUSKEY, J , ROSSJOHN, J , (2012) A STRUCTURAL VOYAGE TOWARD AN UNDERSTANDING OF THE MHC-I-RESTRICTED IMMUNE RESPONSE: LESSONS LEARNED AND MUCH TO BE LEARNED.IMMUNOLOGICAL REVIEWS. VOL. 250. ISSUE . P. 61-81 90 55% 25
4 BLEVINS, SJ , PIERCE, BG , SINGH, NK , RILEY, TP , WANG, Y , SPEAR, TT , NISHIMURA, MI , WENG, ZP , BAKER, BM , (2016) HOW STRUCTURAL ADAPTABILITY EXISTS ALONGSIDE HLA-A2 BIAS IN THE HUMAN ALPHA BETA TCR REPERTOIRE.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. VOL. 113. ISSUE 9. P. E1276 -E1285 59 74% 1
5 COLE, DK , BULEK, AM , DOLTON, G , SCHAUENBERG, AJ , SZOMOLAY, B , RITTASE, W , TRIMBY, A , JOTHIKUMAR, P , FULLER, A , SKOWERA, A , ET AL (2016) HOTSPOT AUTOIMMUNE T CELL RECEPTOR BINDING UNDERLIES PATHOGEN AND INSULIN PEPTIDE CROSS-REACTIVITY.JOURNAL OF CLINICAL INVESTIGATION. VOL. 126. ISSUE 6. P. 2191 -2204 51 67% 5
6 BAKER, BM , SCOTT, DR , BLEVINS, SJ , HAWSE, WF , (2012) STRUCTURAL AND DYNAMIC CONTROL OF T-CELL RECEPTOR SPECIFICITY, CROSS-REACTIVITY, AND BINDING MECHANISM.IMMUNOLOGICAL REVIEWS. VOL. 250. ISSUE . P. 10 -31 73 58% 21
7 BIRNBAUM, ME , MENDOZA, JL , SETHI, DK , DONG, S , GLANVILLE, J , DOBBINS, J , OZKAN, E , DAVIS, MM , WUCHERPFENNIG, KW , GARCIA, KC , (2014) DECONSTRUCTING THE PEPTIDE-MHC SPECIFICITY OF T CELL RECOGNITION.CELL. VOL. 157. ISSUE 5. P. 1073 -1087 38 58% 93
8 GRAS, S , KJER-NIELSEN, L , CHEN, ZJ , ROSSJOHN, J , MCCLUSKEY, J , (2011) THE STRUCTURAL BASES OF DIRECT T-CELL ALLORECOGNITION: IMPLICATIONS FOR T-CELL-MEDIATED TRANSPLANT REJECTION.IMMUNOLOGY AND CELL BIOLOGY. VOL. 89. ISSUE 3. P. 388-395 44 85% 19
9 COLE, DK , MILES, KM , MADURA, F , HOLLAND, CJ , SCHAUENBURG, AJA , GODKIN, AJ , BULEK, AM , FULLER, A , AKPOVWA, HJE , PYMM, PG , ET AL (2014) T-CELL RECEPTOR (TCR)-PEPTIDE SPECIFICITY OVERRIDES AFFINITY-ENHANCING TCR-MAJOR HISTOCOMPATIBILITY COMPLEX INTERACTIONS.JOURNAL OF BIOLOGICAL CHEMISTRY. VOL. 289. ISSUE 2. P. 628 -638 45 75% 6
10 ARMSTRONG, KM , PIEPENBRINK, KH , BAKER, BM , (2008) CONFORMATIONAL CHANGES AND FLEXIBILITY IN T-CELL RECEPTOR RECOGNITION OF PEPTIDE-MHC COMPLEXES.BIOCHEMICAL JOURNAL. VOL. 415. ISSUE . P. 183-196 57 63% 44

Classes with closest relation at Level 1


Rank Class id link
1 18474 IMGT//UPR CNRS 1142//REPERTOIRE SEQUENCING
2 4230 IMMUNOLOGICAL SYNAPSE//LYMPHOCYTE INTERACT//PROGRAM MOL PATHOGENESIS
3 28653 IN SITU TETRAMER STAINING//CONDITIONAL LIGANDS//EX VIVO PHENOTYPING
4 2264 TAPASIN//TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING//PEPTIDE LOADING COMPLEX
5 10486 IMMUNOINFORMATICS//EPITOPE PREDICTION//COMPUTATIONAL VACCINOLOGY
6 6206 T CELL RECEPTOR//IMMUNOGENETICS//SYNOVIAL T CELLS
7 4314 T CELL DEVELOPMENT//THYMIC SELECTION//PRE T CELL RECEPTOR
8 16097 CD3 GAMMA//CD3 EPSILON//CORE PEPTIDE
9 2862 CHIMERIC ANTIGEN RECEPTOR//ADOPTIVE CELL THERAPY//SURG BRANCH
10 1366 INVARIANT CHAIN//HLA DM//ANTIGEN PROCESSING

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