Class information for:
Level 2: CROWN GALL//TI PLASMID//BACTERIAL CONJUGATION

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2608 3584 41.0 67%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
7 4 INFECTIOUS DISEASES//MICROBIOLOGY//VIROLOGY 1353914
33 3       JOURNAL OF BACTERIOLOGY//MICROBIOLOGY//MOLECULAR MICROBIOLOGY 107033
2608 2             CROWN GALL//TI PLASMID//BACTERIAL CONJUGATION 3584
2517 1                   CROWN GALL//TI PLASMID//AGROBACTERIUM VITIS 2221
9253 1                   BACTERIAL CONJUGATION//RELAXASE//COUPLING PROTEIN 1173
29237 1                   PARACOCCUS AMINOPHILUS JCM 7686//PROGRAMA EVOLUC MOL//BACTERIAL GENET 190

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CROWN GALL authKW 583753 3% 69% 99
2 TI PLASMID authKW 429712 2% 86% 59
3 BACTERIAL CONJUGATION authKW 325728 2% 68% 56
4 AGROBACTERIUM VITIS authKW 280745 1% 80% 41
5 AGROBACTERIUM authKW 267364 5% 19% 169
6 AGROBACTERIUM TUMEFACIENS authKW 232853 5% 14% 195
7 T DNA authKW 112626 2% 24% 56
8 OPINES authKW 111273 1% 47% 28
9 T DNA INTEGRATION authKW 109883 1% 56% 23
10 VIRE2 authKW 102823 0% 93% 13

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Microbiology 34173 41% 0% 1466
2 Plant Sciences 9944 24% 0% 860
3 Biochemistry & Molecular Biology 5744 35% 0% 1263
4 Genetics & Heredity 3680 14% 0% 517
5 Biotechnology & Applied Microbiology 1441 10% 0% 352
6 Horticulture 1131 3% 0% 113
7 Cell Biology 465 8% 0% 282
8 Agronomy 151 2% 0% 85
9 Biology 100 2% 0% 80
10 Biochemical Research Methods 18 2% 0% 64

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DAVIS CROWN GALL GRP 95820 0% 75% 15
2 PROGRAMA EVOLUC MOL 34068 0% 67% 6
3 BACTERIAL GENET 31798 1% 14% 27
4 BIOMED BIOTECNOL CANTABRIA IBBTEC 21945 0% 18% 14
5 IDICAN 21795 0% 32% 8
6 ENVIRONM MICROBIOL GENET 19164 0% 75% 3
7 PANT PATHOL 19164 0% 75% 3
8 BIOMED BIOTECNOL CANTABRIA 18527 0% 16% 14
9 MOL BIOL BIOCHEM MIKROBIOL 18030 0% 35% 6
10 EDWARD R MADIGAN 240 17740 0% 42% 5

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PLASMID 100924 4% 8% 155
2 JOURNAL OF BACTERIOLOGY 74033 15% 2% 537
3 MOLECULAR AND GENERAL GENETICS 14881 3% 2% 92
4 MOLECULAR & GENERAL GENETICS 14727 2% 3% 65
5 MOLECULAR MICROBIOLOGY 14277 4% 1% 142
6 PLANT MOLECULAR BIOLOGY 11103 3% 1% 94
7 MOLECULAR PLANT-MICROBE INTERACTIONS 8332 2% 2% 58
8 VITIS 3300 1% 2% 23
9 JOURNAL OF GENERAL MICROBIOLOGY 2922 1% 1% 43
10 PLANT CELL REPORTS 2860 1% 1% 43

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 CROWN GALL 583753 3% 69% 99 Search CROWN+GALL Search CROWN+GALL
2 TI PLASMID 429712 2% 86% 59 Search TI+PLASMID Search TI+PLASMID
3 BACTERIAL CONJUGATION 325728 2% 68% 56 Search BACTERIAL+CONJUGATION Search BACTERIAL+CONJUGATION
4 AGROBACTERIUM VITIS 280745 1% 80% 41 Search AGROBACTERIUM+VITIS Search AGROBACTERIUM+VITIS
5 AGROBACTERIUM 267364 5% 19% 169 Search AGROBACTERIUM Search AGROBACTERIUM
6 AGROBACTERIUM TUMEFACIENS 232853 5% 14% 195 Search AGROBACTERIUM+TUMEFACIENS Search AGROBACTERIUM+TUMEFACIENS
7 T DNA 112626 2% 24% 56 Search T+DNA Search T+DNA
8 OPINES 111273 1% 47% 28 Search OPINES Search OPINES
9 T DNA INTEGRATION 109883 1% 56% 23 Search T+DNA+INTEGRATION Search T+DNA+INTEGRATION
10 VIRE2 102823 0% 93% 13 Search VIRE2 Search VIRE2

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 GELVIN, SB , (2003) AGOBACTERIUM-MEDIATED PLANT TRANSFORMATION: THE BIOLOGY BEHIND THE "GENE-JOCKEYING" TOOL.MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. VOL. 67. ISSUE 1. P. 16-+ 230 65% 412
2 NESTER, EW , (2015) AGROBACTERIUM: NATURE'S GENETIC ENGINEER.FRONTIERS IN PLANT SCIENCE. VOL. 5. ISSUE . P. - 135 84% 7
3 CABEZON, E , RIPOLL-ROZADA, J , PENA, A , DE LA CRUZ, F , ARECHAGA, I , (2015) TOWARDS AN INTEGRATED MODEL OF BACTERIAL CONJUGATION.FEMS MICROBIOLOGY REVIEWS. VOL. 39. ISSUE 1. P. 81 -95 133 71% 17
4 DE LA CRUZ, F , FROST, LS , MEYER, RJ , ZECHNER, EL , (2010) CONJUGATIVE DNA METABOLISM IN GRAM-NEGATIVE BACTERIA.FEMS MICROBIOLOGY REVIEWS. VOL. 34. ISSUE 1. P. 18 -40 132 83% 83
5 WEISING, K , KAHL, G , (1996) NATURAL GENETIC ENGINEERING OF PLANT CELLS: THE MOLECULAR BIOLOGY OF CROWN GALL AND HAIRY ROOT DISEASE.WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY. VOL. 12. ISSUE 4. P. 327-351 238 81% 11
6 GELVIN, SB , (2000) AGROBACTERIUM AND PLANT GENES INVOLVED IN T-DNA TRANSFER AND INTEGRATION.ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY. VOL. 51. ISSUE . P. 223 -256 165 75% 251
7 MCCULLEN, CA , BINNS, AN , (2006) AGROBACTERIUM TUMEFACIENS AND PLANT CELL INTERACTIONS AND ACTIVITIES REQUIRED FOR INTERKINGDOM MACROMOLECULAR TRANSFER.ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY. VOL. 22. ISSUE . P. 101-127 128 90% 108
8 GELVIN, SB , (2009) AGROBACTERIUM IN THE GENOMICS AGE.PLANT PHYSIOLOGY. VOL. 150. ISSUE 4. P. 1665-1676 126 84% 46
9 CHRISTIE, PJ , WHITAKER, N , GONZALEZ-RIVERA, C , (2014) MECHANISM AND STRUCTURE OF THE BACTERIAL TYPE IV SECRETION SYSTEMS.BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH. VOL. 1843. ISSUE 8. P. 1578 -1591 107 71% 47
10 LACROIX, B , CITOVSKY, V , (2013) THE ROLES OF BACTERIAL AND HOST PLANT FACTORS IN AGROBACTERIUM-MEDIATED GENETIC TRANSFORMATION.INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY. VOL. 57. ISSUE 6-8. P. 467-481 126 74% 21

Classes with closest relation at Level 2


Rank Class id link
1 1905 AGROBACTERIUM RHIZOGENES//HAIRY ROOTS//CATHARANTHUS ROSEUS
2 3063 DNA TRANSPOSITION//PHAGE MU//TRANSPOSASE
3 95 PLANT CELL TISSUE AND ORGAN CULTURE//SOMATIC EMBRYOGENESIS//MICROPROPAGATION
4 2094 TRANSPOSABLE ELEMENTS//RETROTRANSPOSON//LTR RETROTRANSPOSON
5 585 NODULATION//FRANKIA//RHIZOBIUM
6 371 RNA POLYMERASE//HFQ//JOURNAL OF BACTERIOLOGY
7 1260 RALSTONIA SOLANACEARUM//BACTERIAL WILT//FIRE BLIGHT
8 1115 GENOME EDITING//CRISPR CAS9//CRISPR
9 2350 BACILLUS SUBTILIS//SPORULATION//JOURNAL OF BACTERIOLOGY
10 910 QUORUM SENSING//PSEUDOMONAS AERUGINOSA//N ACYL HOMOSERINE LACTONE

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