Class information for:
Level 1: BAP1//SETD2//BRCA1 ASSOCIATED PROTEIN 1

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
27586 226 38.8 91%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
6 4 GASTROENTEROLOGY & HEPATOLOGY//ONCOLOGY//SURGERY 1371034
465 3       RENAL CELL CARCINOMA//ANGIOMYOLIPOMA//TUBEROUS SCLEROSIS 24387
318 2             RENAL CELL CARCINOMA//PARTIAL NEPHRECTOMY//KIDNEY NEOPLASMS 18306
27586 1                   BAP1//SETD2//BRCA1 ASSOCIATED PROTEIN 1 226

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BAP1 authKW 3514220 23% 51% 51
2 SETD2 authKW 1087322 6% 62% 13
3 BRCA1 ASSOCIATED PROTEIN 1 authKW 827561 3% 88% 7
4 PBRM1 authKW 540441 4% 50% 8
5 BAP1 PROTEIN authKW 405337 1% 100% 3
6 SYDNEY VITAL TRANSLAT address 374151 3% 46% 6
7 BAP1 CANCER SYNDROME authKW 270225 1% 100% 2
8 HUASHAN UROL address 270225 1% 100% 2
9 MBAITS authKW 270225 1% 100% 2
10 H2AK119UB1 authKW 180148 1% 67% 2

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Oncology 1963 48% 0% 109
2 Genetics & Heredity 569 22% 0% 49
3 Pathology 497 14% 0% 31
4 Cell Biology 447 24% 0% 54
5 Urology & Nephrology 80 6% 0% 14
6 Biochemistry & Molecular Biology 80 19% 0% 44
7 Dermatology 60 4% 0% 10
8 Respiratory System 8 2% 0% 5
9 Hematology 4 2% 0% 5
10 Medicine, Research & Experimental 1 2% 0% 5

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SYDNEY VITAL TRANSLAT 374151 3% 46% 6
2 HUASHAN UROL 270225 1% 100% 2
3 ABORAT INNOVAT CHEM LIFE SCIJIANGSU ENGN 135112 0% 100% 1
4 ABT KREBSGENOMFOR 135112 0% 100% 1
5 BIOL CELLULAIRE MOL CONTROLE PROFERAT 135112 0% 100% 1
6 CANC GASTR PANCREAT SURG 135112 0% 100% 1
7 CANC GENERT 135112 0% 100% 1
8 CANC MED ISRAEL CANADA 135112 0% 100% 1
9 CIC SANTE RECH MED 1402 135112 0% 100% 1
10 CLIN SCI SECT ONCOL PATHOL 135112 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CANCER GENETICS 8169 2% 1% 5
2 ONCOTARGET 1849 6% 0% 13
3 GENES CHROMOSOMES & CANCER 1527 3% 0% 6
4 NATURE GENETICS 1329 3% 0% 7
5 NATURE REVIEWS NEPHROLOGY 1200 1% 0% 2
6 CELL REPORTS 656 2% 0% 4
7 UROLOGIC ONCOLOGY-SEMINARS AND ORIGINAL INVESTIGATIONS 638 1% 0% 3
8 JOURNAL OF THORACIC ONCOLOGY 449 1% 0% 3
9 PATHOLOGY 426 1% 0% 3
10 HUMAN PATHOLOGY 419 2% 0% 5

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 BAP1 3514220 23% 51% 51 Search BAP1 Search BAP1
2 SETD2 1087322 6% 62% 13 Search SETD2 Search SETD2
3 BRCA1 ASSOCIATED PROTEIN 1 827561 3% 88% 7 Search BRCA1+ASSOCIATED+PROTEIN+1 Search BRCA1+ASSOCIATED+PROTEIN+1
4 PBRM1 540441 4% 50% 8 Search PBRM1 Search PBRM1
5 BAP1 PROTEIN 405337 1% 100% 3 Search BAP1+PROTEIN Search BAP1+PROTEIN
6 BAP1 CANCER SYNDROME 270225 1% 100% 2 Search BAP1+CANCER+SYNDROME Search BAP1+CANCER+SYNDROME
7 MBAITS 270225 1% 100% 2 Search MBAITS Search MBAITS
8 H2AK119UB1 180148 1% 67% 2 Search H2AK119UB1 Search H2AK119UB1
9 3P21 LOSS SYNDROME 135112 0% 100% 1 Search 3P21+LOSS+SYNDROME Search 3P21+LOSS+SYNDROME
10 BAP1 GERMLINE MUTATION 135112 0% 100% 1 Search BAP1+GERMLINE+MUTATION Search BAP1+GERMLINE+MUTATION

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 RAI, K , PILARSKI, R , CEBULLA, CM , ABDEL-RAHMAN, MH , (2016) COMPREHENSIVE REVIEW OF BAP1 TUMOR PREDISPOSITION SYNDROME WITH REPORT OF TWO NEW CASES.CLINICAL GENETICS. VOL. 89. ISSUE 3. P. 285 -294 45 59% 13
2 ASCOLI, V , COZZI, I , VATRANO, S , IZZO, S , GIORCELLI, J , ROMEO, E , CARNOVALE-SCALZO, C , GRILLO, LR , FACCIOLO, F , VISCA, P , ET AL (2016) MESOTHELIOMA FAMILIES WITHOUT INHERITANCE OF A BAP1 PREDISPOSING MUTATION.CANCER GENETICS. VOL. 209. ISSUE 9. P. 381 -387 35 81% 0
3 WANG, A , PAPNEJA, A , HYRCZA, M , AL-HABEEB, A , GHAZARIAN, D , (2016) GENE OF THE MONTH: BAP1.JOURNAL OF CLINICAL PATHOLOGY. VOL. 69. ISSUE 9. P. 750 -753 24 83% 2
4 LIAO, LL , TESTA, JR , YANG, HF , (2015) THE ROLES OF CHROMATIN-REMODELERS AND EPIGENETIC MODIFIERS IN KIDNEY CANCER.CANCER GENETICS. VOL. 208. ISSUE 5. P. 206 -214 38 48% 6
5 PIVA, F , SANTONI, M , MATRANA, MR , SATTI, S , GIULIETTI, M , OCCHIPINTI, G , MASSARI, F , CHENG, L , ANTONIOLOPEZ-BELTRAN , SCARPELLI, M , ET AL (2015) BAP1, PBRM1 AND SETD2 IN CLEAR-CELL RENAL CELL CARCINOMA: MOLECULAR DIAGNOSTICS AND POSSIBLE TARGETS FOR PERSONALIZED THERAPIES.EXPERT REVIEW OF MOLECULAR DIAGNOSTICS. VOL. 15. ISSUE 9. P. 1201 -1210 31 53% 7
6 TOGO, Y , YOSHIKAWA, Y , SUZUKI, T , NAKANO, Y , KANEMATSU, A , ZOZUMI, M , NOJIMA, M , HIROTA, S , YAMAMOTO, S , HASHIMOTO-TAMAOKI, T , (2016) GENOMIC PROFILING OF THE GENES ON CHROMOSOME 3P IN SPORADIC CLEAR CELL RENAL CELL CARCINOMA.INTERNATIONAL JOURNAL OF ONCOLOGY. VOL. 48. ISSUE 4. P. 1571 -1580 26 68% 0
7 NASU, M , EMI, M , PASTORINO, S , TANJI, M , POWERS, A , LUK, H , BAUMANN, F , ZHANG, YA , GAZDAR, A , KANODIA, S , ET AL (2015) HIGH INCIDENCE OF SOMATIC BAP1 ALTERATIONS IN SPORADIC MALIGNANT MESOTHELIOMA.JOURNAL OF THORACIC ONCOLOGY. VOL. 10. ISSUE 4. P. 565 -576 24 53% 26
8 BETTI, M , ASPESI, A , BIASI, A , CASALONE, E , FERRANTE, D , OGLIARA, P , GIRONI, LC , GIORGIONE, R , FARINELLI, P , GROSSO, F , ET AL (2016) CDKN2A AND BAP1 GERMLINE MUTATIONS PREDISPOSE TO MELANOMA AND MESOTHELIOMA.CANCER LETTERS. VOL. 378. ISSUE 2. P. 120 -130 28 53% 2
9 BAUMANN, F , FLORES, E , NAPOLITANO, A , KANODIA, S , TAIOLI, E , PASS, H , YANG, HN , CARBONE, M , (2015) MESOTHELIOMA PATIENTS WITH GERMLINE BAP1 MUTATIONS HAVE 7-FOLD IMPROVED LONG-TERM SURVIVAL.CARCINOGENESIS. VOL. 36. ISSUE 1. P. 76 -81 24 59% 14
10 JOSEPH, RW , KAPUR, P , SERIE, DJ , PARASRAMKA, M , HO, TH , CHEVILLE, JC , FRENKEL, E , PARKER, AS , BRUGAROLAS, J , (2016) CLEAR CELL RENAL CELL CARCINOMA SUBTYPES IDENTIFIED BY BAP1 AND PBRM1 EXPRESSION.JOURNAL OF UROLOGY. VOL. 195. ISSUE 1. P. 180 -187 14 70% 9

Classes with closest relation at Level 1


Rank Class id link
1 948 MESOTHELIOMA//MALIGNANT PLEURAL MESOTHELIOMA//MALIGNANT MESOTHELIOMA
2 19177 FUMARATE HYDRATASE//HLRCC//CUTANEOUS LEIOMYOSARCOMA
3 6782 MESOTHELIOMA//MALIGNANT MESOTHELIOMA//WELL DIFFERENTIATED PAPILLARY MESOTHELIOMA
4 3965 EVOLUT CANC//CANCER GENOME//CANCER GENOMICS
5 789 UVEAL MELANOMA//CHOROIDAL MELANOMA//OCULAR ONCOL SERV
6 14125 USP22//SET1//UBIQUITIN SPECIFIC PROTEASE 22
7 25553 JACOBSEN SYNDROME//11Q SYNDROME//11Q TERMINAL DELETION DISORDER
8 3154 HEMANGIOBLASTOMA//VON HIPPEL LINDAU DISEASE//VON HIPPEL LINDAU
9 4095 SPITZ NEVUS//NEUROCUTANEOUS MELANOSIS//SPITZOID MELANOMA
10 2032 CHROMOPHOBE RENAL CELL CARCINOMA//RENAL ONCOCYTOMA//COLLECTING DUCT CARCINOMA

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