Class information for:
Level 1: FFPE//FORMALIN FIXED PARAFFIN EMBEDDED TISSUE//METHACARN

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
11477 979 27.3 83%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
90 3       MATHEMATICAL & COMPUTATIONAL BIOLOGY//BIOINFORMATICS//BMC BIOINFORMATICS 77178
2179 2             REFERENCE GENES//GENORM//NORMFINDER 4941
11477 1                   FFPE//FORMALIN FIXED PARAFFIN EMBEDDED TISSUE//METHACARN 979

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 FFPE authKW 348012 5% 22% 50
2 FORMALIN FIXED PARAFFIN EMBEDDED TISSUE authKW 189903 3% 23% 26
3 METHACARN authKW 166335 1% 67% 8
4 RNALATER authKW 149692 1% 40% 12
5 PARAFFIN EMBEDDED TISSUE authKW 142500 4% 13% 35
6 RNA QUALITY authKW 142144 1% 33% 14
7 PARAFFIN EMBEDDED authKW 140323 2% 25% 18
8 FORMALIN FIXED authKW 130097 2% 19% 22
9 RNA INTEGRITY authKW 128541 1% 32% 13
10 HOPE TECHNIQUE authKW 124755 0% 100% 4

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Pathology 16256 36% 0% 356
2 Medical Laboratory Technology 2566 9% 0% 85
3 Biotechnology & Applied Microbiology 756 13% 0% 127
4 Biochemical Research Methods 731 10% 0% 97
5 Oncology 675 15% 0% 150
6 Cell Biology 385 12% 0% 117
7 Biochemistry & Molecular Biology 249 17% 0% 170
8 Medicine, Research & Experimental 248 7% 0% 69
9 Medicine, Legal 201 2% 0% 16
10 Anatomy & Morphology 143 2% 0% 18

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 SPIDIA CONSORTIUM 62378 0% 100% 2
2 BIOREPOSITORIES BIOSPECIMEN BRANCH 49897 0% 40% 4
3 CHRISTIAN DOPPLER BIOSPECIMEN BIOBANKIN 41584 0% 67% 2
4 ASSOCIE N11 31189 0% 100% 1
5 ASURGEN DISCOVERY SERV 31189 0% 100% 1
6 BIO OURCE MANAGEMENT PLICAT TEAM 31189 0% 100% 1
7 BIOBANK ADM 31189 0% 100% 1
8 BIOBANK BIOSPECIMEN SCI 31189 0% 100% 1
9 BIOINFORMAT EXPT DATA ANAL 31189 0% 100% 1
10 BIOREPOSITORIES BIOSPECIMENS BRANCH 31189 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DIAGNOSTIC MOLECULAR PATHOLOGY 73852 4% 6% 43
2 BIOPRESERVATION AND BIOBANKING 59849 3% 7% 26
3 JOURNAL OF MOLECULAR DIAGNOSTICS 21413 3% 2% 28
4 BIOTECHNIQUES 3995 3% 0% 28
5 EXPERIMENTAL AND MOLECULAR PATHOLOGY 3766 2% 1% 18
6 JOURNAL OF CLINICAL PATHOLOGY 3637 3% 0% 32
7 APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGY 3528 1% 1% 13
8 JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY 2808 2% 0% 23
9 LABORATORY INVESTIGATION 2633 2% 0% 22
10 JOURNAL OF HISTOTECHNOLOGY 2464 1% 1% 8

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 FFPE 348012 5% 22% 50 Search FFPE Search FFPE
2 FORMALIN FIXED PARAFFIN EMBEDDED TISSUE 189903 3% 23% 26 Search FORMALIN+FIXED+PARAFFIN+EMBEDDED+TISSUE Search FORMALIN+FIXED+PARAFFIN+EMBEDDED+TISSUE
3 METHACARN 166335 1% 67% 8 Search METHACARN Search METHACARN
4 RNALATER 149692 1% 40% 12 Search RNALATER Search RNALATER
5 PARAFFIN EMBEDDED TISSUE 142500 4% 13% 35 Search PARAFFIN+EMBEDDED+TISSUE Search PARAFFIN+EMBEDDED+TISSUE
6 RNA QUALITY 142144 1% 33% 14 Search RNA+QUALITY Search RNA+QUALITY
7 PARAFFIN EMBEDDED 140323 2% 25% 18 Search PARAFFIN+EMBEDDED Search PARAFFIN+EMBEDDED
8 FORMALIN FIXED 130097 2% 19% 22 Search FORMALIN+FIXED Search FORMALIN+FIXED
9 RNA INTEGRITY 128541 1% 32% 13 Search RNA+INTEGRITY Search RNA+INTEGRITY
10 HOPE TECHNIQUE 124755 0% 100% 4 Search HOPE+TECHNIQUE Search HOPE+TECHNIQUE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 BONIN, S , STANTA, G , (2013) NUCLEIC ACID EXTRACTION METHODS FROM FIXED AND PARAFFIN-EMBEDDED TISSUES IN CANCER DIAGNOSTICS.EXPERT REVIEW OF MOLECULAR DIAGNOSTICS. VOL. 13. ISSUE 3. P. 271 -282 64 81% 7
2 BRIDGE, JA , (2017) REVERSE TRANSCRIPTION-POLYMERASE CHAIN REACTION MOLECULAR TESTING OF CYTOLOGY SPECIMENS: PRE-ANALYTIC AND ANALYTIC FACTORS.CANCER CYTOPATHOLOGY. VOL. 125. ISSUE 1. P. 11 -19 32 51% 1
3 PERRY, C , CHUNG, JY , YLAYA, K , CHOI, CH , SIMPSON, A , MATSUMOTO, KT , SMITH, WA , HEWITT, SM , (2016) A BUFFERED ALCOHOL-BASED FIXATIVE FOR HISTOMORPHOLOGIC AND MOLECULAR APPLICATIONS.JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY. VOL. 64. ISSUE 7. P. 425 -440 34 79% 0
4 WEISS, ATA , GRUBER, AD , KLOPFLEISCH, R , (2011) EXCAVATION OF A BURIED TREASURE - DNA, MRNA, MIRNA AND PROTEIN ANALYSIS IN FORMALIN FIXED, PARAFFIN EMBEDDED TISSUES.HISTOLOGY AND HISTOPATHOLOGY. VOL. 26. ISSUE 6. P. 797 -810 48 48% 79
5 DOTTI, I , BONIN, S , BASILI, G , NARDON, E , BALANI, A , SIRACUSANO, S , ZANCONATI, F , PALMISANO, S , DE MANZINI, N , STANTA, G , (2010) EFFECTS OF FORMALIN, METHACARN, AND FINEFIX FIXATIVES ON RNA PRESERVATION.DIAGNOSTIC MOLECULAR PATHOLOGY. VOL. 19. ISSUE 2. P. 112-122 32 84% 30
6 ABDUEVA, D , WING, M , SCHAUB, B , TRICHE, T , DAVICIONI, E , (2010) QUANTITATIVE EXPRESSION PROFILING IN FORMALIN-FIXED PARAFFIN-EMBEDDED SAMPLES BY AFFYMETRIX MICROARRAYS.JOURNAL OF MOLECULAR DIAGNOSTICS. VOL. 12. ISSUE 4. P. 409-417 34 74% 41
7 TURASHVILI, G , YANG, WN , MCKINNEY, S , KALLOGER, S , GALE, N , NG, Y , CHOW, K , BELL, L , LORETTE, J , CARRIER, M , ET AL (2012) NUCLEIC ACID QUANTITY AND QUALITY FROM PARAFFIN BLOCKS: DEFINING OPTIMAL FIXATION, PROCESSING AND DNA/RNA EXTRACTION TECHNIQUES.EXPERIMENTAL AND MOLECULAR PATHOLOGY. VOL. 92. ISSUE 1. P. 33-43 29 78% 33
8 KASHOFER, K , VIERTLER, C , PICHLER, M , ZATLOUKAL, K , (2013) QUALITY CONTROL OF RNA PRESERVATION AND EXTRACTION FROM PARAFFIN-EMBEDDED TISSUE: IMPLICATIONS FOR RT-PCR AND MICROARRAY ANALYSIS.PLOS ONE. VOL. 8. ISSUE 7. P. - 30 79% 12
9 BROHOLM, H , HARTMANN, C , STEFANITS, H , BIENKOWSKI, M , GALANSKI, M , MITULOVIC, G , STROBEL, T , GELPI, E , RIBALTA, T , KROS, JM , ET AL (2016) KINFIX - A FORMALIN-FREE NON-COMMERCIAL FIXATIVE OPTIMIZED FOR HISTOLOGICAL, IMMUNOHISTOCHEMICAL AND MOLECULAR ANALYSES OF NEUROSURGICAL TISSUE SPECIMENS.CLINICAL NEUROPATHOLOGY. VOL. 35. ISSUE 1. P. 3 -12 28 82% 0
10 HOWAT, WJ , WILSON, BA , (2014) TISSUE FIXATION AND THE EFFECT OF MOLECULAR FIXATIVES ON DOWNSTREAM STAINING PROCEDURES.METHODS. VOL. 70. ISSUE 1. P. 12 -19 30 67% 22

Classes with closest relation at Level 1


Rank Class id link
1 9825 ANTIGEN RETRIEVAL//JOURNAL OF HISTOTECHNOLOGY//HEAT INDUCED EPITOPE RETRIEVAL
2 11368 RNA AMPLIFICATION//LASER CAPTURE MICRODISSECTION//LASER MICRODISSECTION
3 20679 BRAIN BANK//BRAIN DONATION//AGONAL STATE
4 34880 TRIZOL//ALLEGRO//FUNCTIONAL INFORMATICS
5 19156 TISSUE MICROARRAY//MULTITISSUE BLOCK//PARAFFIN TISSUE CORE BIOPSIES
6 16413 WHOLE GENOME AMPLIFICATION//MULTIPLE DISPLACEMENT AMPLIFICATION//PHI29 DNA POLYMERASE
7 5091 BIOBANK//BIOPRESERVATION AND BIOBANKING//GENOM POLICY
8 4517 REFERENCE GENES//GENORM//NORMFINDER
9 24187 RHGP//WHOLE GENOMIC OLIGONUCLEOTIDE MICROARRAY//12 GENE COLON CANCER ASSAY
10 32297 VESICULAR PACKING MATERIAL//CELL WALL POROSITY//ACETONE PRESERVATION

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