Class information for:
Level 2: PROTOCHLOROPHYLLIDE//CHLOROPHYLL BIOSYNTHESIS//PLASTID TRANSFORMATION

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
1324 8432 39.5 65%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
7 3       PLANT SCIENCES//PLANT PHYSIOLOGY//ARABIDOPSIS 149859
1324 2             PROTOCHLOROPHYLLIDE//CHLOROPHYLL BIOSYNTHESIS//PLASTID TRANSFORMATION 8432
1111 1                   PLASTID TRANSFORMATION//CHLOROPLAST TRANSFORMATION//CHLOROPLAST 2847
9138 1                   PROTOCHLOROPHYLLIDE//NADPH PROTOCHLOROPHYLLIDE OXIDOREDUCTASE//CHLOROPHYLL BIOSYNTHESIS 1184
11897 1                   PORPHOBILINOGEN SYNTHASE//C 5 PATHWAY//5 AMINOLEVULINIC ACID 946
13002 1                   PLASTID SIGNAL//MG CHELATASE//MAGNESIUM CHELATASE 866
13820 1                   RBCS MULTIGENE FAMILY//CAB GENES//RBCS 811
13840 1                   PSEUDOMONAS DENITRIFICANS//PRECORRIN 2//UROPORPHYRINOGEN III METHYLTRANSFERASE 809
19343 1                   EUGLENA GRACILIS//PARAMYLON//AQUACOBALAMIN REDUCTASE 509
20449 1                   CHLOROPLAST DIVISION//PLASTID DIVISION//CYANIDIOSCHYZON MEROLAE 460

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PROTOCHLOROPHYLLIDE authKW 385026 2% 83% 128
2 CHLOROPHYLL BIOSYNTHESIS authKW 351225 2% 72% 134
3 PLASTID TRANSFORMATION authKW 307677 1% 73% 117
4 CHLOROPLAST DIVISION authKW 236944 1% 92% 71
5 CHLOROPLAST authKW 228649 5% 14% 462
6 PLASTID DIVISION authKW 195943 1% 87% 62
7 CHLOROPLAST DEVELOPMENT authKW 169557 1% 53% 89
8 CYANIDIOSCHYZON MEROLAE authKW 151474 1% 70% 60
9 NADPH PROTOCHLOROPHYLLIDE OXIDOREDUCTASE authKW 129442 0% 87% 41
10 PLASTID SIGNAL authKW 125108 0% 89% 39

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Plant Sciences 79209 43% 1% 3597
2 Biochemistry & Molecular Biology 22427 44% 0% 3694
3 Cell Biology 4494 14% 0% 1141
4 Genetics & Heredity 3294 10% 0% 802
5 Biophysics 2544 7% 0% 617
6 Biotechnology & Applied Microbiology 590 5% 0% 427
7 Microbiology 340 4% 0% 352
8 Biology 263 2% 0% 195
9 Horticulture 218 1% 0% 92
10 Biochemical Research Methods 148 2% 0% 203

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PLANT ANAT 25823 0% 17% 41
2 INFORMAT EXTREMOPHILE 25493 0% 41% 17
3 BOYCE THOMPSON PLANT 21826 1% 9% 69
4 PHOTOBIOL 21097 1% 9% 62
5 ROBERT HILL PHOTOSYNTH 20487 0% 33% 17
6 BIOL PLANT PHYSIOL 19020 0% 26% 20
7 SUGIYAMA HUMAN 18612 0% 86% 6
8 FREISING 18097 0% 100% 5
9 PLANT PIGMENT BIOCHEM PHOTOBIOL 18097 0% 100% 5
10 PLANT PHYSIOL PLANT MOL BIOL 16441 0% 45% 10

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PLANT MOLECULAR BIOLOGY 80987 5% 6% 388
2 CURRENT GENETICS 47346 3% 6% 220
3 PLANT PHYSIOLOGY 39252 6% 2% 481
4 PLANT JOURNAL 21782 2% 3% 210
5 PLANT AND CELL PHYSIOLOGY 19022 2% 3% 192
6 PLANT CELL 18966 2% 3% 178
7 PLANTA 18918 3% 2% 216
8 PHOTOSYNTHETICA 15179 1% 4% 113
9 MOLECULAR AND GENERAL GENETICS 12722 2% 3% 131
10 PHYSIOLOGIA PLANTARUM 12601 2% 2% 174

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PROTOCHLOROPHYLLIDE 385026 2% 83% 128 Search PROTOCHLOROPHYLLIDE Search PROTOCHLOROPHYLLIDE
2 CHLOROPHYLL BIOSYNTHESIS 351225 2% 72% 134 Search CHLOROPHYLL+BIOSYNTHESIS Search CHLOROPHYLL+BIOSYNTHESIS
3 PLASTID TRANSFORMATION 307677 1% 73% 117 Search PLASTID+TRANSFORMATION Search PLASTID+TRANSFORMATION
4 CHLOROPLAST DIVISION 236944 1% 92% 71 Search CHLOROPLAST+DIVISION Search CHLOROPLAST+DIVISION
5 CHLOROPLAST 228649 5% 14% 462 Search CHLOROPLAST Search CHLOROPLAST
6 PLASTID DIVISION 195943 1% 87% 62 Search PLASTID+DIVISION Search PLASTID+DIVISION
7 CHLOROPLAST DEVELOPMENT 169557 1% 53% 89 Search CHLOROPLAST+DEVELOPMENT Search CHLOROPLAST+DEVELOPMENT
8 CYANIDIOSCHYZON MEROLAE 151474 1% 70% 60 Search CYANIDIOSCHYZON+MEROLAE Search CYANIDIOSCHYZON+MEROLAE
9 NADPH PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 129442 0% 87% 41 Search NADPH+PROTOCHLOROPHYLLIDE+OXIDOREDUCTASE Search NADPH+PROTOCHLOROPHYLLIDE+OXIDOREDUCTASE
10 PLASTID SIGNAL 125108 0% 89% 39 Search PLASTID+SIGNAL Search PLASTID+SIGNAL

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 LIERE, K , WEIHE, A , BORNER, T , (2011) THE TRANSCRIPTION MACHINERIES OF PLANT MITOCHONDRIA AND CHLOROPLASTS: COMPOSITION, FUNCTION, AND REGULATION.JOURNAL OF PLANT PHYSIOLOGY. VOL. 168. ISSUE 12. P. 1345 -1360 204 66% 81
2 SHIINA, T , TSUNOYAMA, Y , NAKAHIRA, Y , KHAN, MS , (2005) PLASTID RNA POLYMERASES, PROMOTERS, AND TRANSCRIPTION REGULATORS IN HIGHER PLANTS.INTERNATIONAL REVIEW OF CYTOLOGY - A SURVEY OF CELL BIOLOGY, VOL 244. VOL. 244. ISSUE . P. 1 -68 197 86% 87
3 HARRIS, EH , BOYNTON, JE , GILLHAM, NW , (1994) CHLOROPLAST RIBOSOMES AND PROTEIN-SYNTHESIS.MICROBIOLOGICAL REVIEWS. VOL. 58. ISSUE 4. P. 700 -754 366 62% 119
4 BEALE, SI , (1999) ENZYMES OF CHLOROPHYLL BIOSYNTHESIS.PHOTOSYNTHESIS RESEARCH. VOL. 60. ISSUE 1. P. 43 -73 194 81% 222
5 MASUDA, T , TAKAMIYA, K , (2004) NOVEL INSIGHTS INTO THE ENZYMOLOGY, REGULATION AND PHYSIOLOGICAL FUNCTIONS OF LIGHT-DEPENDENT PROTOCHLOROPHYLLIDE OXIDOREDUCTASE IN ANGIOSPERMS.PHOTOSYNTHESIS RESEARCH. VOL. 81. ISSUE 1. P. 1-29 167 88% 85
6 WILLOWS, RD , (2003) BIOSYNTHESIS OF CHLOROPHYLLS FROM PROTOPORPHYRIN IX.NATURAL PRODUCT REPORTS. VOL. 20. ISSUE 3. P. 327-341 180 84% 57
7 BOCK, R , (2015) ENGINEERING PLASTID GENOMES: METHODS, TOOLS, AND APPLICATIONS IN BASIC RESEARCH AND BIOTECHNOLOGY.ANNUAL REVIEW OF PLANT BIOLOGY, VOL 66. VOL. 66. ISSUE . P. 211 -241 124 69% 20
8 BORNER, T , ALEYNIKOVA, AY , ZUBO, YO , KUSNETSOV, VV , (2015) CHLOROPLAST RNA POLYMERASES: ROLE IN CHLOROPLAST BIOGENESIS.BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS. VOL. 1847. ISSUE 9. P. 761 -769 105 77% 18
9 SOLYMOSI, K , SCHOEFS, B , (2010) ETIOPLAST AND ETIO-CHLOROPLAST FORMATION UNDER NATURAL CONDITIONS: THE DARK SIDE OF CHLOROPHYLL BIOSYNTHESIS IN ANGIOSPERMS.PHOTOSYNTHESIS RESEARCH. VOL. 105. ISSUE 2. P. 143 -166 156 66% 39
10 BELYAEVA, OB , LITVIN, FF , (2007) PHOTOACTIVE PIGMENT-ENZYME COMPLEXES OF CHLOROPHYLL PRECURSOR IN PLANT LEAVES.BIOCHEMISTRY-MOSCOW. VOL. 72. ISSUE 13. P. 1458 -1477 126 95% 12

Classes with closest relation at Level 2


Rank Class id link
1 353 PHOTOSYSTEM II//PHOTOSYNTHESIS RESEARCH//PHOTOSYSTEM I
2 976 MITOCHONDRIAL GENOME//MITOCHONDRIAL DNA PART A//MITOCHONDRIAL DNA
3 2289 PHYTOCHROME//PHOTOTROPIN//PHOTOMORPHOGENESIS
4 2933 LEAF SENESCENCE//CHLOROPHYLL DEGRADATION//CHLOROPHYLLASE
5 1181 JOURNAL OF PHYCOLOGY//PROTIST//DESMIDS
6 981 C 4 PHOTOSYNTHESIS//ALTERNATIVE OXIDASE//CO2 CONCENTRATING MECHANISM
7 892 PROTEIN TRANSLOCATION//PROTEIN IMPORT//SECA
8 1296 HEME OXYGENASE//PORPHYRIA//HEME OXYGENASE 1
9 1480 MOLECULAR FARMING//EDIBLE VACCINE//SEED STORAGE PROTEIN
10 1105 CYANOBACTERIA//PHYCOBILISOME//CYANOBACTERIUM

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