Class information for:
Level 1: RHODOPSIN//RETINAL//BATHORHODOPSIN

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
3579 1954 43.7 69%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
405 3       BACTERIORHODOPSIN//G PROTEIN COUPLED RECEPTOR//G PROTEIN 29641
705 2             G PROTEIN COUPLED RECEPTOR//GPCR//RHODOPSIN 12950
3579 1                   RHODOPSIN//RETINAL//BATHORHODOPSIN 1954

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 RHODOPSIN authKW 651117 10% 20% 205
2 RETINAL authKW 149308 3% 15% 62
3 BATHORHODOPSIN authKW 140628 0% 100% 9
4 ZENTRUM BIOPHYS BIOINFORMAT address 113394 1% 48% 15
5 RETINAL CHROMOPHORE authKW 104162 1% 67% 10
6 MOL MED ZELLFOR address 97181 1% 22% 28
7 ARBEITSGRP BIOPHYS address 90397 0% 64% 9
8 METARHODOPSIN II authKW 85068 0% 78% 7
9 METARHODOPSIN III authKW 78127 0% 100% 5
10 11 CIS RETINAL authKW 76546 1% 35% 14

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biochemistry & Molecular Biology 9643 58% 0% 1127
2 Biophysics 6932 22% 0% 432
3 Chemistry, Multidisciplinary 487 13% 0% 254
4 Chemistry, Physical 448 13% 0% 255
5 Physics, Atomic, Molecular & Chemical 372 7% 0% 131
6 Ophthalmology 258 4% 0% 73
7 Biochemical Research Methods 190 4% 0% 83
8 Cell Biology 66 5% 0% 101
9 Chemistry, Organic 59 4% 0% 83
10 Chemistry, Medicinal 5 1% 0% 25

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 ZENTRUM BIOPHYS BIOINFORMAT 113394 1% 48% 15
2 MOL MED ZELLFOR 97181 1% 22% 28
3 ARBEITSGRP BIOPHYS 90397 0% 64% 9
4 THEORET LOW TEMP PHYS 62501 0% 100% 4
5 SECT FLUO CENCE STUDIES 51132 0% 55% 6
6 BIOTECNOL MOL 45049 1% 19% 15
7 ZENTRUM BIOPHYS BIOINFORMAT BPI 31251 0% 100% 2
8 CEBIM 28123 0% 60% 3
9 MED PHYS BIOPHYS CC2 26391 0% 24% 7
10 MEMBRANE BIOCHEM BIOPHYS 23657 1% 6% 25

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOCHEMISTRY 27575 16% 1% 307
2 PHOTOCHEMISTRY AND PHOTOBIOLOGY 18964 5% 1% 101
3 BIOPHYSICS OF STRUCTURE AND MECHANISM 7420 0% 7% 7
4 PHOTOBIOCHEMISTRY AND PHOTOBIOPHYSICS 6764 1% 3% 14
5 BIOPHYSICAL JOURNAL 5414 4% 0% 83
6 METHODS IN ENZYMOLOGY 4870 4% 0% 72
7 JOURNAL OF CHEMICAL THEORY AND COMPUTATION 2813 1% 1% 29
8 PROGRESS IN RETINAL RESEARCH 2714 0% 9% 2
9 VISION RESEARCH 2626 2% 0% 40
10 JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 2275 6% 0% 120

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 RHODOPSIN 651117 10% 20% 205 Search RHODOPSIN Search RHODOPSIN
2 RETINAL 149308 3% 15% 62 Search RETINAL Search RETINAL
3 BATHORHODOPSIN 140628 0% 100% 9 Search BATHORHODOPSIN Search BATHORHODOPSIN
4 RETINAL CHROMOPHORE 104162 1% 67% 10 Search RETINAL+CHROMOPHORE Search RETINAL+CHROMOPHORE
5 METARHODOPSIN II 85068 0% 78% 7 Search METARHODOPSIN+II Search METARHODOPSIN+II
6 METARHODOPSIN III 78127 0% 100% 5 Search METARHODOPSIN+III Search METARHODOPSIN+III
7 11 CIS RETINAL 76546 1% 35% 14 Search 11+CIS+RETINAL Search 11+CIS+RETINAL
8 LUMIRHODOPSIN 62501 0% 100% 4 Search LUMIRHODOPSIN Search LUMIRHODOPSIN
9 OCTOPUS RHODOPSIN 62497 0% 67% 6 Search OCTOPUS+RHODOPSIN Search OCTOPUS+RHODOPSIN
10 TRANSDUCIN 52901 1% 14% 24 Search TRANSDUCIN Search TRANSDUCIN

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 MENON, ST , HAN, M , SAKMAR, TP , (2001) RHODOPSIN: STRUCTURAL BASIS OF MOLECULAR PHYSIOLOGY.PHYSIOLOGICAL REVIEWS. VOL. 81. ISSUE 4. P. 1659 -1688 147 59% 198
2 LI, J , EDWARDS, PC , BURGHAMMER, M , VILLA, C , SCHERTLER, GFX , (2004) STRUCTURE OF BOVINE RHODOPSIN IN A TRIGONAL CRYSTAL FORM.JOURNAL OF MOLECULAR BIOLOGY. VOL. 343. ISSUE 5. P. 1409-1438 83 69% 558
3 OSTROVSKY, MA , FELDMAN, TB , (2012) CHEMISTRY AND MOLECULAR PHYSIOLOGY OF VISION: LIGHT-SENSITIVE PROTEIN RHODOPSIN.RUSSIAN CHEMICAL REVIEWS. VOL. 81. ISSUE 11. P. 1071 -1090 106 63% 2
4 WALCZAK, E , ANDRUNIOW, T , (2015) IMPACTS OF RETINAL POLYENE (DE)METHYLATION ON THE PHOTOISOMERIZATION MECHANISM AND PHOTON ENERGY STORAGE OF RHODOPSIN.PHYSICAL CHEMISTRY CHEMICAL PHYSICS. VOL. 17. ISSUE 26. P. 17169 -17181 69 87% 1
5 CROZIER, PS , STEVENS, MJ , WOOLF, TB , (2007) HOW A SMALL CHANGE IN RETINAL LEADS TO G-PROTEIN ACTIVATION: INITIAL EVENTS SUGGESTED BY MOLECULAR DYNAMICS CALCULATIONS.PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. VOL. 66. ISSUE 3. P. 559-574 98 67% 18
6 SAKMAR, TP , MENON, ST , MARIN, EP , AWAD, ES , (2002) RHODOPSIN: INSIGHTS FROM RECENT STRUCTURAL STUDIES.ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE. VOL. 31. ISSUE . P. 443-484 119 53% 171
7 BOVEE-GEURTS, PHM , FERNANDEZ, IF , LIU, RSH , MATHIES, RA , LUGTENBURG, J , DEGRIP, WJ , (2009) FLUORO DERIVATIVES OF RETINAL ILLUMINATE THE DECISIVE ROLE OF THE C-12-H ELEMENT IN PHOTOISOMERIZATION AND RHODOPSIN ACTIVATION.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. VOL. 131. ISSUE 49. P. 17933 -17942 70 89% 6
8 HORNAK, V , AHUJA, S , EILERS, M , GONCALVES, JA , SHEVES, M , REEVES, PJ , SMITH, SO , (2010) LIGHT ACTIVATION OF RHODOPSIN: INSIGHTS FROM MOLECULAR DYNAMICS SIMULATIONS GUIDED BY SOLID-STATE NMR DISTANCE RESTRAINTS.JOURNAL OF MOLECULAR BIOLOGY. VOL. 396. ISSUE 3. P. 510-527 80 67% 32
9 DEGRIP, WJ , BOVEE-GEURTS, PHM , WANG, YJ , VERHOEVEN, MA , LUGTENBURG, J , (2011) CYCLOPROPYL AND ISOPROPYL DERIVATIVES OF 11-CIS AND 9-CIS RETINALS AT C-9 AND C-13: SUBTLE STERIC DIFFERENCES WITH MAJOR EFFECTS ON LIGAND EFFICACY IN RHODOPSIN.JOURNAL OF NATURAL PRODUCTS. VOL. 74. ISSUE 3. P. 383 -390 66 86% 5
10 RIVALTA, I , NENOV, A , GARAVELLI, M , (2014) MODELLING RETINAL CHROMOPHORES PHOTOISOMERIZATION: FROM MINIMAL MODELS IN VACUO TO ULTIMATE BIDIMENSIONAL SPECTROSCOPY IN RHODOPSINS.PHYSICAL CHEMISTRY CHEMICAL PHYSICS. VOL. 16. ISSUE 32. P. 16865 -16879 69 69% 9

Classes with closest relation at Level 1


Rank Class id link
1 4196 G PROTEIN COUPLED RECEPTOR//GPCR//MEMBRANE PROT STRUCT FUNCT UNIT
2 162 BACTERIORHODOPSIN//PURPLE MEMBRANE//PHOTOCYCLE
3 2682 PHOTOTRANSDUCTION//CYCLIC NUCLEOTIDE GATED CHANNEL//RETINAL RODS
4 9993 TRICHROMACY//COLOR VISION//CONE PHOTOPIGMENTS
5 26857 GEN ECOL PHYSIOL HUMAN ANIM//BULLA GOULDIANA//APLYSIA EYE
6 9208 VISUAL CYCLE//INTERPHOTORECEPTOR RETINOID BINDING PROTEIN//FUNDUS ALBIPUNCTATUS
7 9648 CONICAL INTERSECTIONS//DIABATIC STATES//NONADIABATIC COUPLING TERMS
8 20149 PHOTOACTIVE YELLOW PROTEIN//PHOTOACTIVE YELLOW PROTEIN PYP//XANTHOPSINS
9 5460 VISUAL PIGMENT//MICROSPECTROPHOTOMETRY//VISUAL PIGMENTS
10 4434 RETINITIS PIGMENTOSA//RPGR//AUTOSOMAL DOMINANT RETINITIS PIGMENTOSA

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