Class information for:
Level 1: DNA CURVATURE//A TRACT//JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
2425 2248 45.0 75%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
5 4 CHEMISTRY, ORGANIC//CHEMISTRY, INORGANIC & NUCLEAR//CHEMISTRY, MULTIDISCIPLINARY 1745167
183 3       APTAMER//G QUADRUPLEX//RIBOZYME 56307
740 2             JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS//SINGLE MOLECULE FORCE SPECTROSCOPY//Z DNA 12558
2425 1                   DNA CURVATURE//A TRACT//JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 2248

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DNA CURVATURE authKW 273847 2% 46% 44
2 A TRACT authKW 187156 1% 66% 21
3 JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS journal 141951 8% 6% 181
4 DNA FLEXIBILITY authKW 137000 1% 39% 26
5 B DNA authKW 110206 1% 32% 25
6 BIOCHIM THEOR address 103020 2% 16% 47
7 SEQUENCE DEPENDENT STRUCTURE authKW 96578 0% 89% 8
8 DNA BENDING authKW 96360 2% 15% 46
9 DNA HYDRATION authKW 88267 1% 50% 13
10 UPR 9080 address 85797 1% 20% 32

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biochemistry & Molecular Biology 16086 68% 0% 1536
2 Biophysics 14339 29% 0% 657
3 Chemistry, Physical 356 11% 0% 258
4 Biochemical Research Methods 210 4% 0% 94
5 Chemistry, Multidisciplinary 188 9% 0% 203
6 Biology 174 3% 0% 72
7 Mathematical & Computational Biology 143 2% 0% 40
8 Crystallography 136 3% 0% 62
9 Physics, Atomic, Molecular & Chemical 119 4% 0% 95
10 Cell Biology 44 4% 0% 101

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOCHIM THEOR 103020 2% 16% 47
2 UPR 9080 85797 1% 20% 32
3 MOL BIOPHYS PROGRAM 83547 2% 18% 35
4 CNRS UPR 9080 39139 0% 41% 7
5 INFORMAT CHEM 28925 0% 30% 7
6 CHEM BIOMOLEC STEREODYNAM 27163 0% 100% 2
7 SWISS FED POLYTECH 27163 0% 100% 2
8 JOINT IRB BSC PROGRAM COMPUTAT BIOL 15054 0% 12% 9
9 MOL MODELING BIOINFORMAT UNIT 14371 0% 18% 6
10 ADV BIOMED COMP SIL EXCELLENCE 13582 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 141951 8% 6% 181
2 BIOPOLYMERS 41484 6% 2% 141
3 JOURNAL OF MOLECULAR BIOLOGY 20679 8% 1% 189
4 NUCLEIC ACIDS RESEARCH 18817 10% 1% 235
5 BIOPHYSICAL CHEMISTRY 7010 2% 1% 47
6 BIOPHYSICAL JOURNAL 6297 4% 0% 96
7 BIOCHEMISTRY 5706 7% 0% 152
8 MOLECULAR BIOLOGY 3489 2% 1% 35
9 CURRENT OPINION IN STRUCTURAL BIOLOGY 3117 1% 1% 23
10 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 2204 1% 1% 27

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 DNA CURVATURE 273847 2% 46% 44 Search DNA+CURVATURE Search DNA+CURVATURE
2 A TRACT 187156 1% 66% 21 Search A+TRACT Search A+TRACT
3 DNA FLEXIBILITY 137000 1% 39% 26 Search DNA+FLEXIBILITY Search DNA+FLEXIBILITY
4 B DNA 110206 1% 32% 25 Search B+DNA Search B+DNA
5 SEQUENCE DEPENDENT STRUCTURE 96578 0% 89% 8 Search SEQUENCE+DEPENDENT+STRUCTURE Search SEQUENCE+DEPENDENT+STRUCTURE
6 DNA BENDING 96360 2% 15% 46 Search DNA+BENDING Search DNA+BENDING
7 DNA HYDRATION 88267 1% 50% 13 Search DNA+HYDRATION Search DNA+HYDRATION
8 A DNA 67425 1% 41% 12 Search A+DNA Search A+DNA
9 BASE STACKING INTERACTIONS 56588 0% 83% 5 Search BASE+STACKING+INTERACTIONS Search BASE+STACKING+INTERACTIONS
10 DINUCLEOTIDE STEP 56588 0% 83% 5 Search DINUCLEOTIDE+STEP Search DINUCLEOTIDE+STEP

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 BEVERIDGE, DL , DIXIT, SB , BARREIRO, G , THAYER, KM , (2004) MOLECULAR DYNAMICS SIMULATIONS OF DNA CURVATURE AND FLEXIBILITY: HELIX PHASING AND PREMELTING.BIOPOLYMERS. VOL. 73. ISSUE 3. P. 380 -403 117 86% 42
2 HARAN, TE , MOHANTY, U , (2009) THE UNIQUE STRUCTURE OF A-TRACTS AND INTRINSIC DNA BENDING.QUARTERLY REVIEWS OF BIOPHYSICS. VOL. 42. ISSUE 1. P. 41-81 129 53% 65
3 BEVERIDGE, DL , CHEATHAM, TE , MEZEI, M , (2012) THE ABCS OF MOLECULAR DYNAMICS SIMULATIONS ON B-DNA, CIRCA 2012.JOURNAL OF BIOSCIENCES. VOL. 37. ISSUE 3. P. 379 -397 69 81% 18
4 BEVERIDGE, DL , DIXIT, SB , BYUN, KS , BARREIRO, G , THAYER, KM , PONOMAREV, S , (2004) MOLECULAR DYNAMICS OF DNA AND PROTEIN-DNA COMPLEXES: PROGRESS ON SEQUENCE EFFECTS, CONFORMATIONAL STABILITY, AXIS CURVATURE, AND STRUCTURAL BIOINFORMATICS.NUCLEIC ACIDS: CURVATURE AND DEFORMATION. VOL. 884. ISSUE . P. 13 -64 109 67% 5
5 HUD, NV , PLAVEC, J , (2003) A UNIFIED MODEL FOR THE ORIGIN OF DNA SEQUENCE-DIRECTED CURVATURE.BIOPOLYMERS. VOL. 69. ISSUE 1. P. 144-159 76 86% 88
6 MCCONNELL, KJ , BEVERIDGE, DL , (2001) MOLECULAR DYNAMICS SIMULATIONS OF B '-DNA: SEQUENCE EFFECTS ON A-TRACT-INDUCED BENDING AND FLEXIBILITY.JOURNAL OF MOLECULAR BIOLOGY. VOL. 314. ISSUE 1. P. 23 -40 76 87% 48
7 MA, N , VAN DER VAART, A , (2016) ANISOTROPY OF B-DNA GROOVE BENDING.JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. VOL. 138. ISSUE 31. P. 9951 -9958 66 66% 1
8 DIXIT, SB , MEZEI, M , BEVERIDGE, DL , (2012) STUDIES OF BASE PAIR SEQUENCE EFFECTS ON DNA SOLVATION BASED ON ALL-ATOM MOLECULAR DYNAMICS SIMULATIONS.JOURNAL OF BIOSCIENCES. VOL. 37. ISSUE 3. P. 399-421 66 72% 13
9 HARTMANN, B , LAVERY, R , (1996) DNA STRUCTURAL FORMS.QUARTERLY REVIEWS OF BIOPHYSICS. VOL. 29. ISSUE 4. P. 309-368 149 46% 74
10 YOUNG, MA , RAVISHANKER, G , BEVERIDGE, DL , BERMAN, HM , (1995) ANALYSIS OF LOCAL HELIX BENDING IN CRYSTAL-STRUCTURES OF DNA OLIGONUCLEOTIDES AND DNA-PROTEIN COMPLEXES.BIOPHYSICAL JOURNAL. VOL. 68. ISSUE 6. P. 2454-2468 98 72% 78

Classes with closest relation at Level 1


Rank Class id link
1 5998 Z DNA//B Z TRANSITION//Z DNA BINDING PROTEIN
2 13926 BIOL MACROMOL STRUCT//SHEARED G CENTER DOT A PAIR//SHEARED A CENTER DOT C PAIR
3 7907 DISTANCE GEOMETRY//JOURNAL OF MAGNETIC RESONANCE SERIES B//DGGTATACC2
4 18639 SUBPICOSECOND DYNAMICS//AG BIOPOLYMERSPEKTROSKOPIE//LINEA BIOL MOL SALUD BIMSA
5 9067 DNA DENATURATION//DNA DYNAMICS//PEYRARD BISHOP DAUXOIS MODEL
6 6536 MAGNETIC TWEEZERS//BMSE PROGRAM//BIONANOSCI
7 8817 REVERSING PULSE ELECTRIC BIREFRINGENCE//LOW FREQUENCY ANOMALIES IN COLLOIDAL ELECTRO OPTICS//MAXWELL WAGNER POLARIZABILITY
8 3208 MINOR GROOVE BINDER//DISTAMYCIN//PYRROLE IMIDAZOLE POLYAMIDE
9 36765 PROGRAM BIOCHEM CHEM//2 SELENOURIDINE TRIPHOSPHATE//3 5 O DIACETYL 5 AMINOMETHYL 2 DEOXYURIDINE
10 22597 AMINOACYL INCORPORATION REACTION//BIOMED BIOORGAN CHEM//AMINOACYL INCORPORATION

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