Class information for:
Level 1: GENETICALLY ENCODED CALCIUM INDICATORS//NETWORK IMAGING GRP//CORTICAL PYRAMIDAL CELL

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
22149 392 49.7 88%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
10 4 OPTICS//PHYSICS, PARTICLES & FIELDS//PHYSICS, MULTIDISCIPLINARY 1131262
359 3       JOURNAL OF BIOMEDICAL OPTICS//BIOMEDICAL OPTICS EXPRESS//OPTICS 34746
1192 2             OPTOGENETICS//MULTIPHOTON MICROSCOPY//FLUORESCENT PROTEIN 9265
22149 1                   GENETICALLY ENCODED CALCIUM INDICATORS//NETWORK IMAGING GRP//CORTICAL PYRAMIDAL CELL 392

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 GENETICALLY ENCODED CALCIUM INDICATORS authKW 215704 2% 46% 6
2 NETWORK IMAGING GRP address 177030 1% 45% 5
3 CORTICAL PYRAMIDAL CELL authKW 155791 1% 100% 2
4 NEURAL ACTIVITY IMAGING authKW 155791 1% 100% 2
5 GCAMP authKW 131606 2% 24% 7
6 NEURAL CIRCUITS BEHAV GRP address 124628 1% 40% 4
7 GENETICALLY ENCODED CALCIUM INDICATOR authKW 116840 1% 50% 3
8 GECO authKW 103859 1% 67% 2
9 LARGE SCALE RECORDING authKW 103859 1% 67% 2
10 CALCIUM IMAGING authKW 88669 8% 3% 33

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Neurosciences 3033 51% 0% 200
2 Biochemical Research Methods 959 17% 0% 67
3 Cell Biology 155 12% 0% 47
4 Physiology 117 7% 0% 27
5 Biology 40 4% 0% 14
6 Biochemistry & Molecular Biology 35 13% 0% 49
7 Neuroimaging 19 1% 0% 4
8 Developmental Biology 19 2% 0% 7
9 Biophysics 14 3% 0% 13
10 Mathematical & Computational Biology 11 1% 0% 5

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 NETWORK IMAGING GRP 177030 1% 45% 5
2 NEURAL CIRCUITS BEHAV GRP 124628 1% 40% 4
3 ABT SYN SEN ALTKREISE PLASTIZITAT 77896 0% 100% 1
4 AG ZELLULARE DYNAMIK 77896 0% 100% 1
5 CALCIUM SIGNAL 77896 0% 100% 1
6 CARL ICAHN 270C 77896 0% 100% 1
7 CENTRALIZED RUMENT IL ADCIF 77896 0% 100% 1
8 FAIRCHILD 1002 77896 0% 100% 1
9 GENES CIRCU BEHAV 77896 0% 100% 1
10 GENETICALLY ENCODED NEURONAL INDICATOR EFFECTOR 77896 0% 100% 1

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 FRONTIERS IN NEURAL CIRCUITS 41195 5% 3% 19
2 NATURE METHODS 14898 5% 1% 18
3 CELL CALCIUM 6963 4% 1% 16
4 NEUROPHOTONICS 6310 1% 3% 3
5 NEURON 3799 5% 0% 20
6 BRAIN CELL BIOLOGY 2224 0% 3% 1
7 ELIFE 1681 2% 0% 8
8 NATURE PROTOCOLS 1676 2% 0% 7
9 NATURE NEUROSCIENCE 1626 2% 0% 9
10 CURRENT OPINION IN NEUROBIOLOGY 1604 2% 0% 7

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 GENETICALLY ENCODED CALCIUM INDICATORS 215704 2% 46% 6 Search GENETICALLY+ENCODED+CALCIUM+INDICATORS Search GENETICALLY+ENCODED+CALCIUM+INDICATORS
2 CORTICAL PYRAMIDAL CELL 155791 1% 100% 2 Search CORTICAL+PYRAMIDAL+CELL Search CORTICAL+PYRAMIDAL+CELL
3 NEURAL ACTIVITY IMAGING 155791 1% 100% 2 Search NEURAL+ACTIVITY+IMAGING Search NEURAL+ACTIVITY+IMAGING
4 GCAMP 131606 2% 24% 7 Search GCAMP Search GCAMP
5 GENETICALLY ENCODED CALCIUM INDICATOR 116840 1% 50% 3 Search GENETICALLY+ENCODED+CALCIUM+INDICATOR Search GENETICALLY+ENCODED+CALCIUM+INDICATOR
6 GECO 103859 1% 67% 2 Search GECO Search GECO
7 LARGE SCALE RECORDING 103859 1% 67% 2 Search LARGE+SCALE+RECORDING Search LARGE+SCALE+RECORDING
8 CALCIUM IMAGING 88669 8% 3% 33 Search CALCIUM+IMAGING Search CALCIUM+IMAGING
9 ACTION POTENTIAL NEURAL NETWORK 77896 0% 100% 1 Search ACTION+POTENTIAL+NEURAL+NETWORK Search ACTION+POTENTIAL+NEURAL+NETWORK
10 AM ESTER DYE 77896 0% 100% 1 Search AM+ESTER+DYE Search AM+ESTER+DYE

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref.
in cl.		 Shr. of ref. in
cl.		 Citations
1 ROSE, T , GOLTSTEIN, PM , PORTUGUES, R , GRIESBECK, O , (2014) PUTTING A FINISHING TOUCH ON GEC'S.FRONTIERS IN MOLECULAR NEUROSCIENCE. VOL. 7. ISSUE . P. - 41 48% 18
2 AKERBOOM, J , CHEN, TW , WARDILL, TJ , TIAN, L , MARVIN, JS , MUTLU, S , CALDERON, NC , ESPOSTI, F , BORGHUIS, BG , SUN, XR , ET AL (2012) OPTIMIZATION OF A GCAMP CALCIUM INDICATOR FOR NEURAL ACTIVITY IMAGING.JOURNAL OF NEUROSCIENCE. VOL. 32. ISSUE 40. P. 13819 -13840 27 36% 309
3 THEIS, L , BERENS, P , FROUDARAKIS, E , REIMER, J , ROSON, MR , BADEN, T , EULER, T , TOLIAS, AS , BETHGE, M , (2016) BENCHMARKING SPIKE RATE INFERENCE IN POPULATION CALCIUM IMAGING.NEURON. VOL. 90. ISSUE 3. P. 471 -482 20 61% 4
4 OHKURA, M , SASAKI, T , SADAKARI, J , GENGYO-ANDO, K , KAGAWA-NAGAMURA, Y , KOBAYASHI, C , IKEGAYA, Y , NAKAI, J , (2012) GENETICALLY ENCODED GREEN FLUORESCENT CA2+ INDICATORS WITH IMPROVED DETECTABILITY FOR NEURONAL CA2+ SIGNALS.PLOS ONE. VOL. 7. ISSUE 12. P. - 21 68% 43
5 TIAN, L , HIRES, SA , MAO, T , HUBER, D , CHIAPPE, ME , CHALASANI, SH , PETREANU, L , AKERBOOM, J , MCKINNEY, SA , SCHREITER, ER , ET AL (2009) IMAGING NEURAL ACTIVITY IN WORMS, FLIES AND MICE WITH IMPROVED GCAMP CALCIUM INDICATORS.NATURE METHODS. VOL. 6. ISSUE 12. P. 875 -U113 18 42% 715
6 RENNINGER, SL , ORGER, MB , (2013) TWO-PHOTON IMAGING OF NEURAL POPULATION ACTIVITY IN ZEBRAFISH.METHODS. VOL. 62. ISSUE 3. P. 255-267 45 32% 10
7 HELASSA, N , PODOR, B , FINE, A , TOROK, K , (2016) DESIGN AND MECHANISTIC INSIGHT INTO ULTRAFAST CALCIUM INDICATORS FOR MONITORING INTRACELLULAR CALCIUM DYNAMICS.SCIENTIFIC REPORTS. VOL. 6. ISSUE . P. - 22 59% 0
8 BROUSSARD, GJ , LIANG, RQ , TIAN, L , (2014) MONITORING ACTIVITY IN NEURAL CIRCUITS WITH GENETICALLY ENCODED INDICATORS.FRONTIERS IN MOLECULAR NEUROSCIENCE. VOL. 7. ISSUE . P. - 44 26% 20
9 LIN, MZ , SCHNITZER, MJ , (2016) GENETICALLY ENCODED INDICATORS OF NEURONAL ACTIVITY.NATURE NEUROSCIENCE. VOL. 19. ISSUE 9. P. 1142 -1153 38 27% 3
10 DENEUX, T , KASZAS, A , SZALAY, G , KATONA, G , LAKNER, T , GRINVALD, A , ROZSA, B , VANZETTA, I , (2016) ACCURATE SPIKE ESTIMATION FROM NOISY CALCIUM SIGNALS FOR ULTRAFAST THREE-DIMENSIONAL IMAGING OF LARGE NEURONAL POPULATIONS IN VIVO.NATURE COMMUNICATIONS. VOL. 7. ISSUE . P. - 22 52% 1

Classes with closest relation at Level 1


Rank Class id link
1 17338 VOLTAGE SENSITIVE DYE//OPTICAL RECORDING//EMBRYONIC BRAIN STEM
2 12009 CEREBRAL CIRCUITRY//FAST SPIKING CELL//SYST NEUROBIOL S
3 9943 OPTOGENETICS//CHANNELRHODOPSIN//OPTICAL STIMULATION
4 2299 FLUORESCENT PROTEIN//GREEN FLUORESCENT PROTEIN//CELL FUNCT DYNAM
5 22049 MAUTHNER CELL//ARCHER FISH//TOXOTES CHATAREUS
6 18748 LIGHT SHEET MICROSCOPY//LIGHT SHEET FLUORESCENCE MICROSCOPY//SELECTIVE PLANE ILLUMINATION MICROSCOPY
7 17984 MICROENDOSCOPY//ENDOMICROSCOPE//IMAGE FIBER
8 3982 MULTIPHOTON MICROSCOPY//LASER OPTOELECT TECHNOL//FUJIAN PROV PHOTON TECHNOL
9 11192 ZEBRAFISH//NOVEL TANK TEST//AQUAT OURCES PROGRAM
10 7023 TRIPARTITE SYNAPSE//ASTROCYTES//GLIOTRANSMISSION

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