Class information for:
Level 1: PHYTOCHROME//PHOTOMORPHOGENESIS//PHYTOCHROME A

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
1238 2767 44.2 76%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
7 3       PLANT SCIENCES//PLANT PHYSIOLOGY//ARABIDOPSIS 149859
2289 2             PHYTOCHROME//PHOTOTROPIN//PHOTOMORPHOGENESIS 4572
1238 1                   PHYTOCHROME//PHOTOMORPHOGENESIS//PHYTOCHROME A 2767

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PHYTOCHROME authKW 1893976 16% 40% 434
2 PHOTOMORPHOGENESIS authKW 871877 7% 40% 197
3 PHYTOCHROME A authKW 338488 2% 65% 47
4 LIGHT SIGNALING authKW 272392 2% 44% 56
5 COP1 authKW 240841 1% 53% 41
6 SHADE AVOIDANCE authKW 196966 2% 36% 50
7 PHYCOCYANOBILIN authKW 157248 1% 49% 29
8 CRYPTOCHROME authKW 143417 2% 19% 69
9 PHYTOCHROME B authKW 133165 1% 46% 26
10 SPA1 authKW 127207 1% 82% 14

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Plant Sciences 46798 57% 0% 1567
2 Biochemistry & Molecular Biology 5908 40% 0% 1102
3 Biophysics 3068 13% 0% 357
4 Cell Biology 2861 18% 0% 496
5 Developmental Biology 229 2% 0% 61
6 Genetics & Heredity 103 4% 0% 112
7 Horticulture 29 1% 0% 22
8 Biology 29 2% 0% 46
9 Agronomy 2 1% 0% 25
10 Evolutionary Biology 1 1% 0% 15

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 BIOL BOT 2 99417 1% 35% 26
2 PLANT GENE EXP S 97186 2% 14% 61
3 IFEVA 84759 2% 12% 63
4 PEKING YALE JOINT PLANT MOL GENET AGROBIOTE 77871 1% 22% 32
5 PLANT DEV MOL BIOL 68743 0% 69% 9
6 PHOTOPERCEPT SIGNAL TRANSDUCT 40614 0% 41% 9
7 PLANT FIELD GARDEN CROPS 33101 0% 100% 3
8 KUMHO LIFE SCI 29602 1% 19% 14
9 PHOTOBIOL PHOTOSYNTHESIS UNIT 24824 0% 75% 3
10 BASIC FO TRY PROTE 24818 0% 38% 6

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PLANT CELL 51489 6% 3% 167
2 PHOTOCHEMISTRY AND PHOTOBIOLOGY 46021 7% 2% 187
3 PLANT PHYSIOLOGY 32339 9% 1% 249
4 PLANT JOURNAL 28938 5% 2% 138
5 PLANTA 24138 5% 2% 139
6 PLANT CELL AND ENVIRONMENT 24129 4% 2% 105
7 PLANT AND CELL PHYSIOLOGY 13102 3% 1% 91
8 MOLECULAR PLANT 10286 1% 3% 30
9 PHYSIOLOGIA PLANTARUM 5047 2% 1% 63
10 PLANT MOLECULAR BIOLOGY 3876 2% 1% 49

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 PHYTOCHROME 1893976 16% 40% 434 Search PHYTOCHROME Search PHYTOCHROME
2 PHOTOMORPHOGENESIS 871877 7% 40% 197 Search PHOTOMORPHOGENESIS Search PHOTOMORPHOGENESIS
3 PHYTOCHROME A 338488 2% 65% 47 Search PHYTOCHROME+A Search PHYTOCHROME+A
4 LIGHT SIGNALING 272392 2% 44% 56 Search LIGHT+SIGNALING Search LIGHT+SIGNALING
5 COP1 240841 1% 53% 41 Search COP1 Search COP1
6 SHADE AVOIDANCE 196966 2% 36% 50 Search SHADE+AVOIDANCE Search SHADE+AVOIDANCE
7 PHYCOCYANOBILIN 157248 1% 49% 29 Search PHYCOCYANOBILIN Search PHYCOCYANOBILIN
8 CRYPTOCHROME 143417 2% 19% 69 Search CRYPTOCHROME Search CRYPTOCHROME
9 PHYTOCHROME B 133165 1% 46% 26 Search PHYTOCHROME+B Search PHYTOCHROME+B
10 SPA1 127207 1% 82% 14 Search SPA1 Search SPA1

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 CHEN, M , CHORY, J , (2011) PHYTOCHROME SIGNALING MECHANISMS AND THE CONTROL OF PLANT DEVELOPMENT.TRENDS IN CELL BIOLOGY. VOL. 21. ISSUE 11. P. 664-671 108 92% 103
2 SINESHCHEKOV, VA , (1995) PHOTOBIOPHYSICS AND PHOTOBIOCHEMISTRY OF THE HETEROGENEOUS PHYTOCHROME SYSTEM.BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS. VOL. 1228. ISSUE 2-3. P. 125 -164 195 85% 70
3 BAE, G , CHOI, G , (2008) DECODING OF LIGHT SIGNALS BY PLANT PHYTOCHROMES AND THEIR INTERACTING PROTEINS.ANNUAL REVIEW OF PLANT BIOLOGY. VOL. 59. ISSUE . P. 281 -311 113 77% 172
4 KAMI, C , LORRAIN, S , HORNITSCHEK, P , FANKHAUSER, C , (2010) LIGHT-REGULATED PLANT GROWTH AND DEVELOPMENT.PLANT DEVELOPMENT. VOL. 91. ISSUE . P. 29-66 136 56% 180
5 WANG, H , WANG, HY , (2015) PHYTOCHROME SIGNALING: TIME TO TIGHTEN UP THE LOOSE ENDS.MOLECULAR PLANT. VOL. 8. ISSUE 4. P. 540 -551 116 69% 13
6 FRANKLIN, KA , QUAIL, PH , (2010) PHYTOCHROME FUNCTIONS IN ARABIDOPSIS DEVELOPMENT.JOURNAL OF EXPERIMENTAL BOTANY. VOL. 61. ISSUE 1. P. 11 -24 87 79% 234
7 MENON, C , SHEERIN, DJ , HILTBRUNNER, A , (2016) SPA PROTEINS: SPANNING THE GAP BETWEEN VISIBLE LIGHT AND GENE EXPRESSION.PLANTA. VOL. 244. ISSUE 2. P. 297 -312 105 75% 2
8 CASAL, JJ , CANDIA, AN , SELLARO, R , (2014) LIGHT PERCEPTION AND SIGNALLING BY PHYTOCHROME A.JOURNAL OF EXPERIMENTAL BOTANY. VOL. 65. ISSUE 11. P. 2835 -2845 92 87% 15
9 SU, YS , LAGARIAS, JC , ROCKWELL, NC , (2006) PHYTOCHROME STRUCTURE AND SIGNALING MECHANISMS.ANNUAL REVIEW OF PLANT BIOLOGY. VOL. 57. ISSUE . P. 837 -858 78 84% 388
10 SINESHCHEKOV, VA , (2004) PHYTOCHROME A: FUNCTIONAL DIVERSITY AND POLYMORPHISM.PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES. VOL. 3. ISSUE 6. P. 596-607 117 92% 12

Classes with closest relation at Level 1


Rank Class id link
1 7757 PHOTOTROPIN//CHLOROPLAST MOVEMENT//LOV DOMAIN
2 5204 CONSTANS//FLOWERING LOCUS T//FLORIGEN
3 16182 LIGHT QUALITY//SPECTRAL QUALITY//PHOTOMORPHOGENESIS
4 13820 RBCS MULTIGENE FAMILY//CAB GENES//RBCS
5 13874 DIPYRRINONE//BILE PIGMENTS//MONATSHEFTE FUR CHEMIE
6 12931 PHOTOLYASE//DNA PHOTOLYASE//PHOTOCATALYSE BIOHYDROGENE
7 19896 U BOX//RING H2//SAUL1
8 23384 HETEROTRIMERIC G PROTEIN//AGB1//GPA1
9 13002 PLASTID SIGNAL//MG CHELATASE//MAGNESIUM CHELATASE
10 3924 PHYCOBILISOME//C PHYCOCYANIN//PHYCOBILIPROTEINS

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