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Kursen Tillämpad bioinformatik DD2404
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HT 2016 appbio16
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HT 2016 appbio16
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Tillämpad bioinformatik (DD2404)
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HT 2016 appbio16
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Project grading
Projects are not graded, except for Pass/Fail.
HT 2016 appbio16
Tillämpad bioinformatik
DD2404 | hp
Urval: endast omgång/grupp
Översikt
Nyhetsflöde
Schema
HT 2016 appbio16
Course outline
Lecture plan
Computer labs
Lab 1
Unix introduction
Working in Unix
Random DNA sequences
Reading Stockholm files
Re-formatting DNA
Translate DNA
Advanced assignment
Lab 2
Download genomes
Compute GC content
Comparing base composition
Compatibility
Advanced assignment
Lab 3
Translate DNA
Motif filter
KLEEK aligned?
Remote Blast
Blast parsing
Advanced assignment
Lab 4
Using BioMart
Your own database
Querying Ensembl
Advanced assignment
Deadlines
Project
Controls
Project grading
Project list
Reducing noise in protein multialignments
How often are domains single-exon?
Unravel motifs in UTRs and introns
Predicting signal peptides
How should DNA reads be trimmed?
