Lecture plan

Lecture Contents 1 Introduction 2 Unix (filesystem, basic commands, editors); Chapters 4, 5, 6 in Haddock-Dunn 3 Python basics (Ch 7 and 8) 4 Python (sort-of Ch 9-12) 5 Python and regexps: Modules basics; simple I/O; writing unix tools in Python. (sort-of Ch 9-12) 5 Python: Important modules; using regex's; (sort-of Ch 9-12) 6 More Python (sort-of Ch 9-12) 7 BioPython, ETE, MatPlotLib 8 Relational databases and data modeling 9 SQL (Ch 15) 10 SQL (Ch 15)