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Januari 2016

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Lärare kommenterade 16 januari 2016

The former, C and D are called unique here.

 
under HT 2015 appbio15

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kommenterade 7 januari 2016

Hi all! If some other desperate person is starting the project just now and needs somebody to work with, PM me.

 
December 2015
under HT 2015 appbio15

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Lärare kommenterade 21 december 2015

Bra!

 
under HT 2015 appbio15

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Lärare kommenterade 21 december 2015

It is primarily the yes/no classification that I am looking for. The "real tools" are also interested in the cleavage site, while other details are of little interest. 

 
under HT 2015 appbio15

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kommenterade 17 december 2015

This seems to work, thanks!

 
under HT 2015 appbio15

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kommenterade 11 december 2015

There is no table called gene_stable_id, but a column called gene.stable_id.

 
under HT 2015 appbio15

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kommenterade 8 december 2015

It seems the example output doesn't match the requirements. Col 3 is specified to be the hit accession, which in this example would be 24130, i.e.

<Hit_accession>24130</Hit_accession>

But the output shows it as "CYTC_MOUSE", which is a part of the Hit_def, which is not in the required output spec.

 
under HT 2015 appbio15

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kommenterade 8 december 2015

Some problems with Biomart downtime right now. Try one of the mirrors:

http://www.ensembl.org/info/about/mirrors.html

 
under HT 2015 appbio15

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kommenterade 5 december 2015

I'm looking for a partner for the bioinformatics project. My background is in mathematics and computer science. Send me a message if interested.

 
November 2015
under HT 2015 appbio15

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Lärare kommenterade 30 november 2015

I added a parenthesis which hopefully clarifies the assignment for future generations. But I won't fail you for writing a more general program which solves the assignment.