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Docs and links
Course documents
* Ten Simple Rules for the Open Development of Scientific Software (Prlić & Procter, PLoS Comp Biol, 2012)
* Ten Simple Rules for Reproducible Computational Research (Sandve et al., PLoS Comp Bio, 2013).
* So you want to be a computational biologist? (Loman and Watson, Nature Biotech, 2013)
* Best Practices for Scientific Computing (Wilson et al, PLoS Biology, 2014)
For the curious Here are links if you want to learn more.
* Using named pipes and process substitution in Bioinformatics
* Minimum standards for bioinformatics command line tools by Torsten Seemann.
* Now also published in the journal GigScience!
* SQLite - Working with large data sets in Python effectively by Sebastian Raschka