Docs and links

Course documents

• Ten Simple Rules for Reproducible Computational Research, PLoS Comp Bio, 2013.
• Best Practices for Scientific Computing, PLoS Biology, 2014

For the curious

Here are links if you want to learn more.

• Using named pipes and process substitution in Bioinformatics
• Minimum standards for bioinformatics command line tools by Torsten Seemann.
  • Now also published in the journal GigScience!
• SQLite - Working with large data sets in Python effectively by Sebastian Raschka