Stefania Giacomello

Publications

• Asp M*, Giacomello S*, Larsson L, Wu C, Fürth D, Qian X, Wärdell E, Custodio J, Reimegård J, Salmén F, Österholm C, Ståhl PL, Sundström E, Åkesson E, Bergmann O, Bienko M, Månsson-Broberg A, Nilsson M, Sylvén C, Lundeberg J. A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.

Cell. 2019 Dec 12;179(7):1647-1660.e19. 

• Giacomello S, Lundeberg J. Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays.

Nature Protocols. 2018 Nov;13(11):2425-2446. 

• Marques S*, van Bruggen D*, Vanichkina DP*, Floriddia EM, Munguba H, Väremo L, Giacomello S, Falcão AM, Meijer M, Björklund ÅK, Hjerling-Leffler J, Taft RJ, Castelo-Branco G. Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development.

Developmental Cell. 2018 Aug 20;46(4):504-517.e7. 

• Cossu RM*, Casola C*, Giacomello S, Vidalis A, Scofield DG, Zuccolo A. LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes.

Genome Biololy and Evolution. 2017 Dec 1;9(12):3449-3462. 

• Giacomello S, Salmén F, Terebieniec BK, Vickovic S, Navarro JF, Alexeyenko A, Reimegård J, McKee LS, Mannapperuma C, Bulone V, Ståhl PL, Sundström JF, Street NR, Lundeberg J. Spatially resolved transcriptome profiling in model plant species.

Nature Plants. 2017 May 8;3:17061. doi: 10.1038/nplants.2017.61.

• Lindholm ME*, Giacomello S*, Werne Solnestam B, Fischer H, Huss M, Kjellqvist S, Sundberg CJ. The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts.

PLoS Genetics. 2016 Sep 22;12(9):e1006294. 

• Pinosio S, Giacomello S, Faivre-Rampant P, Taylor G, Jorge V, Le Paslier MC, Zaina G, Bastien C, Cattonaro F, Marroni F, Morgante M. Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation.

Molecular Biology and Evolution. 2016 Oct;33(10):2706-19. 

• Ståhl PL*, Salmén F*, Vickovic S#, Lundmark A#, Navarro JF, Magnusson J, Giacomello S, Asp M, Westholm JO, Huss M, Mollbrink A, Linnarsson S, Codeluppi S, Borg Å, Pontén F, Costea PI, Sahlén P, Mulder J, Bergmann O, Lundeberg J, Frisén J. Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Science. 2016 Jul 1;353(6294):78-82. doi: 10.1126/science.aaf2403.

• Faivre-Rampant P*, Zaina G*, Jorge V, Giacomello S, Segura V, Scalabrin S, Guérin V, De Paoli E, Aluome C, Viger M, Cattonaro F, Payne A, PaulStephenRaj P, Le Paslier MC, Berard A, Allwright MR, Villar M, Taylor G, Bastien C, Morgante M. New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array.

Molecular Ecology Resources. 2016 Jul;16(4):1023-36. 

• Bersani C, Huss M, Giacomello S, Xu LD, Bianchi J, Eriksson S, Jerhammar F, Alexeyenko A, Vilborg A, Lundeberg J, Lui WO, Wiman KG. Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis.

Oncotarget. 2016 Jan 12;7(2):1895-911. 

• Kutsenko A, Svensson T, Nystedt B, Lundeberg J, Björk P, Sonnhammer E, Giacomello S, Visa N, Wieslander L. The Chironomus tentans genome sequence and the organization of the Balbiani ring genes.

BMC Genomics. 2014 Sep 27;15:819. 

• Nystedt B*, Street NR*, Wetterbom A#, Zuccolo A#, Lin YC#, Scofield DG#, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S. The Norway spruce genome sequence and conifer genome evolution.

Nature. 2013 May 30;497(7451):579-84.