Publikationer av Fredrik Edfors Arfwidsson
Refereegranskade
Artiklar
[1]
Löfgren, L., von Euler Chelpin, M., Bhat, M., Althage, M., Hober, A., Edfors, F. ... Miliotis, T. (2024). Patient-Centric Quantitative Microsampling for Accurate Determination of Urine Albumin to Creatinine Ratio (UACR) in a Clinical Setting. The Journal of Applied Laboratory Medicine, 9(2), 329-341.
[2]
Kotol, D., Woessmann, J., Hober, A., Alvez, M. B., Tran Minh, K. H., Pontén, F. ... Edfors, F. (2023). Absolute Quantification of Pan-Cancer Plasma Proteomes Reveals Unique Signature in Multiple Myeloma. Cancers, 15(19).
[3]
Woessmann, J., Petrosius, V., Üresin, N., Kotol, D., Aragon-Fernandez, P., Hober, A. ... Schoof, E. M. (2023). Assessing the Role of Trypsin in Quantitative Plasma and Single-Cell Proteomics toward Clinical Application. Analytical Chemistry, 95(36), 13649-13658.
[4]
Iglesias, M. J., Sanchez-Rivera, L., Ibrahim-Kosta, M., Naudin, C., Munsch, G., Goumidi, L. ... Odeberg, J. (2023). Elevated plasma complement factor H related 5 protein is associated with venous thromboembolism. Nature Communications, 14(1).
[5]
Sporre, E., Karlsen, J., Schriever, K., Asplund-Samuelsson, J., Janasch, M., Strandberg, L. ... Hudson, E. P. (2023). Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation. Communications Biology, 6(1).
[6]
Alvez, M. B., Edfors, F., von Feilitzen, K., Zwahlen, M., Mardinoglu, A., Edqvist, P. H. ... Uhlén, M. (2023). Next generation pan-cancer blood proteome profiling using proximity extension assay. Nature Communications, 14(1).
[7]
Johansson, C., Hunt, H., Signorelli, M., Edfors, F., Hober, A., Svensson, A.-S. ... Al-Khalili Szigyarto, C. (2023). Orthogonal proteomics methods warrant the development of Duchenne muscular dystrophy biomarkers. Clinical Proteomics, 20(1).
[8]
Hober, A., Rekanovic, M., Forsström, B., Hansson, S., Kotol, D., Percy, A. J. ... Miliotis, T. (2023). Targeted proteomics using stable isotope labeled protein fragments enables precise and robust determination of total apolipoprotein(a) in human plasma. PLOS ONE, 18(2 February).
[9]
Woessmann, J., Kotol, D., Hober, A., Uhlén, M. & Edfors, F. (2022). Addressing the Protease Bias in Quantitative Proteomics. Journal of Proteome Research, 21(10), 2526-2534.
[10]
Malm, M., Kuo, C.-C., Moradi, M., Mebrahtu, A., Wistbacka, N., Razavi, R. ... Rockberg, J. (2022). Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins. Metabolic engineering, 72, 171-187.
[11]
Edfors, F., Iglesias, M. J., Butler, L. M. & Odeberg, J. (2022). Proteomics in thrombosis research. RESEARCH AND PRACTICE IN THROMBOSIS AND HAEMOSTASIS, 6(3).
[12]
Saghaleyni, R., Malm, M., Moruzzi, N., Zrimec, J., Razavi, R., Wistbacka, N. ... Rockberg, J. (2022). Report Enhanced metabolism and negative regulation of ER stress support higher erythropoietin production in HEK293 cells. Cell Reports, 39(11), 110936.
[13]
Karlsson, M., Zhang, C., Mear, L., Zhong, W., Digre, A., Katona, B. ... Lindskog, C. (2021). A single-cell type transcriptomics map of human tissues. Science Advances, 7(31).
[14]
Karlsson, M. J., Svedman, F. C., Abdellah, T., Kotol, D., Hoiom, V., Fagerberg, L. ... Maddalo, G. (2021). Inflammation and Apolipoproteins Are Potential Biomarkers for Stratification of Cutaneous Melanoma Patients for Immunotherapy and Targeted Therapy. Cancer Research, 81(9), 2545-2555.
[15]
Gummesson, A., Björnson, E., Fagerberg, L., Zhong, W., Abdellah, T., Edfors, F. ... Bergström, G. (2021). Longitudinal plasma protein profiling of newly diagnosed type 2 diabetes. EBioMedicine, 63.
[16]
Zhong, W., Altay, Ö., Arif, M., Edfors, F., Doganay, L., Mardinoglu, A. ... Fagerberg, L. (2021). Next generation plasma proteome profiling of COVID-19 patients with mild to moderate symptoms. EBioMedicine, 74, 103723.
[17]
Zhong, W., Edfors, F., Gummesson, A., Bergstroem, G., Fagerberg, L. & Uhlén, M. (2021). Next generation plasma proteome profiling to monitor health and disease. Nature Communications, 12(1).
[18]
Hober, A., Hua, T. K., Foley, D., McDonald, T., Vissers, J. P., Pattison, R. ... Edfors, F. (2021). Rapid and sensitive detection of SARS-CoV-2 infection using quantitative peptide enrichment LC-MS analysis. eLIFE, 10.
[19]
Kotol, D., Hober, A., Strandberg, L., Svensson, A.-S., Uhlén, M. & Edfors, F. (2021). Targeted proteomics analysis of plasma proteins using recombinant protein standards for addition only workflows. BioTechniques, 71(3), 473-483.
[20]
Sjöstedt, E., Zhong, W., Fagerberg, L., Karlsson, M., Mitsios, N., Adori, C. ... Mulder, J. (2020). An atlas of the protein-coding genes in the human, pig, and mouse brain. Science, 367(6482), 1090-+.
[21]
Dodig-Crnkovic, T., Hong, M.-G., Thomas, C. E., Häussler, R. S., Bendes, A., Dale, M. ... Schwenk, J. M. (2020). Facets of individual-specific health signatures determined from longitudinal plasma proteome profiling. EBioMedicine, 57.
[22]
Tegel, H., Dannemeyer, M., Kanje, S., Sivertsson, Å., Berling, A., Svensson, A.-S. ... Hober, S. (2020). High throughput generation of a resource of the human secretome in mammalian cells. New Biotechnology, 58, 45-54.
[23]
Abdellah, T., Gummesson, A., Zhong, W., Koistinen, I. S., Lakshmikanth, T., Olsson, L. M. ... Fagerberg, L. (2020). Integration of molecular profiles in a longitudinal wellness profiling cohort. Nature Communications, 11(1).
[24]
Kotol, D., Hunt, H., Hober, A., Karlsson, M. J., Forsström, B., Gummesson, A. ... Edfors, F. (2020). Longitudinal Plasma Protein Profiling Using Targeted Proteomics and Recombinant Protein Standards. Journal of Proteome Research, 19(12), 4815-4825.
[25]
Kagan, J., Moritz, R. L., Mazurchuk, R., Lee, J. H., Kharchenko, P. V., Rozenblatt-Rosen, O. ... Srivastava, S. (2020). National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level : Interrogation of Premalignant Lesions. Journal of Proteome Research, 19(5), 1900-1912.
[26]
Hong, M.-G., Dodig-Crnkovic, T., Chen, X., Drobin, K., Lee, W., Wang, Y. ... Schwenk, J. M. (2020). Profiles of histidine-rich glycoprotein associate with age and risk of all-cause mortality. Life Science Alliance, 3(10), e202000817.
[27]
Zhong, W., Gummesson, A., Abdellah, T., Karlsson, M., Hong, M.-G., Schwenk, J. M. ... Uhlén, M. (2020). Whole-genome sequence association analysis of blood proteins in a longitudinal wellness cohort. Genome Medicine, 12(1).
[28]
Uhlén, M., Karlsson, M., Zhong, W., Abdellah, T., Pou, C., Mikes, J. ... Brodin, P. (2019). A genome-wide transcriptomic analysis of protein-coding genes in human blood cells. Science, 366(6472), 1471-+.
[29]
Hober, A., Edfors, F., Ryaboshapkina, M., Malmqvist, J., Rosengren, L., Percy, A. J. ... Miliotis, T. (2019). Absolute Quantification of Apolipoproteins Following Treatment with Omega-3 Carboxylic Acids and Fenofibrate Using a High Precision Stable Isotope-labeled Recombinant Protein Fragments Based SRM Assay. Molecular & Cellular Proteomics, 18(12), 2433-2446.
[30]
Andersson, A., Remnestål, J., Nellgård, B., Vunk, H., Kotol, D., Edfors, F. ... Fredolini, C. (2019). Development of parallel reaction monitoring assays for cerebrospinal fluid proteins associated with Alzheimer's disease. Clinica Chimica Acta, 494, 79-93.
[31]
Edfors, F., Forsström, B., Vunk, H., Kotol, D., Fredolini, C., Maddalo, G. ... Uhlén, M. (2019). Screening a Resource of Recombinant Protein Fragments for Targeted Proteomics. Journal of Proteome Research, 18(7), 2706-2718.
[32]
Häussler, R. S., Bendes, A., Iglesias, M. J., Sanchez-Rivera, L., Dodig-Crnkovic, T., Byström, S. ... Schwenk, J. M. (2019). Systematic Development of Sandwich Immunoassays for the Plasma Secretome. Proteomics.
[33]
Uhlén, M., Karlsson, M. J., Hober, A., Svensson, A.-S., Scheffel, J., Kotol, D. ... Sivertsson, Å. (2019). The human secretome. Science Signaling, 12(609).
[34]
The, M., Edfors, F., Perez-Riverol, Y., Payne, S. H., Hoopmann, M. R., Palmblad, M. ... Käll, L. (2018). A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms. Journal of Proteome Research, 17(5), 1879-1886.
[35]
Edfors, F., Hober, A., Linderbäck, K., Maddalo, G., Azimi, A., Sivertsson, Å. ... Uhlén, M. (2018). Enhanced validation of antibodies for research applications. Nature Communications, 9.
[36]
Jahn, M., Vialas, V., Karlsen, J., Maddalo, G., Edfors, F., Forsström, B. ... Hudson, E. P. (2018). Growth of Cyanobacteria Is Constrained by the Abundance of Light and Carbon Assimilation Proteins. Cell Reports, 25(2), 478-+.
[37]
Zamani, L., Lundqvist, M., Zhang, Y., Aberg, M., Edfors, F., Bidkhori, G. ... Chotteau, V. (2018). High Cell Density Perfusion Culture has a Maintained Exoproteome and Metabolome. Biotechnology Journal, 13(10).
[38]
Azimi, A., Caramuta, S., Seashore-Ludlow, B., Boström, J., Robinson, J. L., Edfors, F. ... Maddalo, G. (2018). Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors. Molecular Systems Biology, 14(3).
[39]
Uhlén, M., Zhang, C., Lee, S., Sjöstedt, E., Fagerberg, L., Bidkhori, G. ... Ponten, F. (2017). A pathology atlas of the human cancer transcriptome. Science, 357(6352), 660-+.
[40]
Edfors, F., Danielsson, F., Hallström, B. M., Käll, L., Lundberg, E., Ponten, F. ... Uhlén, M. (2016). Gene-specific correlation of RNA and protein levels in human cells and tissues. Molecular Systems Biology, 12(10).
[41]
Fredolini, C., Byström, S., Pin, E., Edfors, F., Tamburro, D., Iglesias, M. J. ... Schwenk, J. M. (2016). Immunocapture strategies in translational proteomics. Expert Review of Proteomics, 13(1), 83-98.
[42]
Wayne, G., Graves, A., Hassabis, D., Saha, S., Weber, C. A., Hyman, A. A. ... Ziv, N. E. (2016). Principles of Systems Biology, No. 11. CELL SYSTEMS, 3(5), 406-410.
[43]
Lundqvist, M., Edfors, F., Sivertsson, Å., Hallström, B. M., Hudson, E. P., Tegel, H. ... Rockberg, J. (2015). Solid-phase cloning for high-throughput assembly of single and multiple DNA parts. Nucleic Acids Research, 43(7).
[44]
Edfors, F., Boström, T., Forsström, B., Zeiler, M., Johansson, H. J., Lundberg, E. ... Uhlén, M. (2014). Immunoproteomics using polyclonal antibodies and stable isotope-labeled affinity-purified recombinant proteins. Molecular & Cellular Proteomics, 13(6), 1611-1624.
Icke refereegranskade
Avhandlingar
[45]
Edfors, F. (2016). Targeted proteomics methods for protein quantification of human cells, tissues and blood (Doktorsavhandling , Kungliga Tekniska högskolan, Stockholm, TRITA-BIO-Report 2016:16). Hämtad från http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-193951.
Övriga
[46]
Sporre, E., Karlsen, J., Schriever, K., Asplund-Samuelsson, J., Janasch, M., Strandberg, L., Kotol, D., Zeckey, L., Piazza, I., Syrén, P.-O., Edfors, F., Hudson, E. P. (2022). Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation. (Manuskript).
[47]
Edfors, F., Forsström, B., Fredolini, C., Boström, T., Maddalo, G., Svensson, A.-S., Tegel, H., Nilsson, P., Jochen, S., Uhlén, M. (). A recombinant protein standard resource for targeted proteomics. (Manuskript).
[48]
Dezfouli, M., Redin, D., Borgström, E., Edfors, F., Uhlén, M., Schwenk, J. M., Ahmadian, A. (). Droplet-based Immuno-Sequencing to Deconvolute Affinity Recognition Events. (Manuskript).
[49]
Hober, A., Strandberg, L., von Feilitzen, K., Zwahlen, M., Kotol, D., Forsström, B., Sjöberg, A., Tegel, H., Uhlén, M., Edfors, F. (). Evaluation of an enhanced antibody-validation strategy for Western blot applications based on migration pattern recognition. (Manuskript).
[50]
Karlsson, M., Alvez, M. B., Shi, M., Zhang, C., Méar, L., Zhong, W., Schutten, R., Hikmet, F., Digre, A., Katona, B., Vuu, J., Sjöstedt, E., Bosic, M., Edfors, F., Oksvold, P., von Feilitzen, K., Zwahlen, M., Forsberg, M., Johansson, F., Mulder, J., Mardinoglu, A., Sivertsson, Å., Ponten, F., Lindskog, C., Fagerberg, L., Uhlén, M. (). Genome-wide single cell annotation of the human protein-coding genes. (Manuskript).
[51]
Malm, M., Kuo, C.-C., Moradi Barzadd, M., Mebrahtu, A., Wistbacka, N., Razavi, R., Volk, A.-L., Lundqvist, M., Kotol, D., Edfors, F., Gräslund, T., Chotteau, V., Field, R., Varley, P. G., Roth, R. G., Lewis, N. E., Hatton, D., Rockberg, J. (). Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins. (Manuskript).
[52]
Sporre, E., Karlsen, J., Schriever, K., Asplund-Samuelsson, J., Janasch, M., Kotol, D., Strandberg, L., Zeckey, L., Piazza, I., Syrén, P.-O., Edfors, F., Hudson, E. P. (). Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation. (Manuskript).
[53]
Sporre, E., Karlsen, J., Schriever, K., Asplund-Samuelsson, J., Janasch, M., Kotol, D., Strandberg, L., Zeckey, L., Piazza, I., Syrén, P.-O., Edfors, F., Hudson, P. (). Metabolite-level enzyme regulation in and around the bacterial Calvin cycle revealed by interaction proteomics. (Manuskript).
[54]
Johansson, C., Schrama, E., Kotol, D., Hober, A., Koeks, Z., van de Velde, N., Verschuuren, J. J.G.M., Uhlén, M., Niks, E. H., Edfors, F., Spitali, P., Al-Khalili Szigyarto, C. (). Monitoring Biomarker Study in Becker Muscular Dystrophy using Data Independent Acquisition LC-MS/MS. (Manuskript).
[55]
Hober, A., Rekanovic, M., Forsström, B., Hansson, S., Kotol, D., Percy, A. J., Uhlén, M., Oscarsson, J., Edfors, F., Miliotis, T. (). Targeted Proteomics Using Stable Isotope Labeled Protein Fragments Enables Precise and Robust Determination of Total Apolipoprotein(a) in Human Plasma. (Manuskript).
[56]
Edfors, F., Linderbäck, K., Sivertsson, Å., Danielsson, F., Fagerberg, L., Lundberg, E., Alm, T., Forsström, B., Uhlén, M. (). Validation of antibodies for Western blot applications using orthogonal methods. (Manuskript).
Senaste synkning med DiVA:
2024-12-24 00:04:12