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FCB3203 Biocatalysis for Doctoral Students 4.0 credits

Course memo Spring 2024-60620

Version 1 – 01/13/2024, 11:16:43 AM

Course offering

Spring 2024-60620 (Start date 16 Jan 2024, English)

Language Of Instruction

English

Offered By

CBH/Industrial Biotechnology

Course memo Spring 2024

Headings denoted with an asterisk ( * ) is retrieved from the course syllabus version Spring 2022

Content and learning outcomes

Course contents

The course provides an overview of the research area Biocatalysis, with special emphasis on the application of enzymes for environmentally sustainable production of chemical products.

Relevant enzymes and their reaction mechanisms are discussed. Furthermore, central experimental techniques for the use of enzymes in organic solvents are discussed, as well as methods for optimizing stereochemical yields with industrial processes as examples.

Furthermore, the course provides knowledge about general and current techniques for design and modification of enzymes, for example directed evolution, for application in biocatalysis. The student carries out a project where a theoretical experiment is designed which includes, among other things, to select and justify choice of methods for experiment execution and analysis of results.

Intended learning outcomes

After completion of the course the student shall be able to

  • demonstrate in-depth knowledge and analytical skills in the field of biocatalysis
  • demonstrate good ability to explain and analyze complex concepts in biocatalysis based on relevant research literature, and in a pedagogical way communicate the knowledge in writing
  • formulate and discuss in writing how biocatalysis can be applied in industry to create more environmentally sustainable biotechnological and chemical processes and, to reflect on sustainable societal development

Learning activities

The course contains a lecture series partly arranged jointly with the Masters' course BB2460 Biocatalysis. The lectures are mainly pre-recorded and the videos should be watched on your own. The course contains four scheduled lectures on Zoom, an additional three scheduled workshops on Zoom and three two-hour seminars on Zoom at the end of the course where the master students present their laboratory research projects. Apart from these scheduled activities, the course contains an individual theoretical research project/literature study presented in a report and two short assignments to submit. 

Detailed plan

Learning activities Content Preparations for workshop

On your own: Lecture 1

Introduction to Biocatalysis & Course requirements

Watch pre-recorded lecture online

On your own: Lecture 2

Fine Chemicals

Watch Pre-recorded lecture online, read the articles

22 Jan, 10:15-12:00
Guest Lecture by
Christian Schnepel, KTH

Stereoselectivity & Enzymes in Pharmaceutical Chemistry

Participate in the live lecture on Zoom

On your own: Lecture 4

Enzyme Mechanisms

Watch Pre-recorded material, read the articles

29 Jan, 10:15-12:00
Workshop about Lecture 1-4

Workshop, problem-solving and Q/A session

Participate in the workshop on Zoom

On your own: Lecture 5

Hydrolases

Watch Pre-recorded material, read the articles

On your own: Lecture 6

Oxidoreductases

Watch Pre-recorded material, read the articles

5 Feb, 10:15-12:00
Workshop about Lecture 5-6

Workshop, problem-solving and Q/A session

Participate in the workshop on Zoom

On your own: Lecture 7

Transferases, Lyases, Isomerases & Ligases

Watch Pre-recorded material, read the articles

On your own: Lecture 8

Organic Solvents & Water Activity

Watch Pre-recorded material, read the articles

12 Feb, 10:15-12:00
Guest Lecture by
Per-Olof Syrén, KTH

Enzyme Engineering Strategies

Participate in the live lecture on Zoom

16 Feb, 08:15-10:00
Guest Lecture by
Christian Schnepel, KTH

Enzyme Mining

Participate in the live lecture on Zoom

19 Feb, 10:15-12:00
Guest Lecture by
Karim Cassimjee, EnginZyme AB

Immobilisation & Biocatalysis at a company Participate in the live lecture on Zoom

On your own: Lecture 12

Cascade Biocatalysis

Watch Pre-recorded material, read the articles

20 Feb, 10:15-12:00
Workshop about Lecture 7-12

Workshop, problem-solving and Q/A session

Participate in the workshop on Zoom

Seminars The Master students present their Biocatalysis research projects Be an active participant in the Q&A sessions

 

Preparations before course start

Recommended prerequisites

Courses in organic chemistry and/or biochemistry at the second cycle.

Literature

The compulsory course literature consist of a few scientific review articles selected for each of the lectures in the course. These articles can be found through links provided for each lecture in Canvas. No compulsory text book is used but there are several optional books:

  • Kurt Faber. Biotransformations in Organic Chemistry:  A Textbook, 7th Edition. Springer-Verlag:  Heidelberg. 2018. e-ISBN 978-3-319-61590-5. Available as e-book through the KTH Library.
  • Andreas Liese, Karsten Seelbach, Christian Wandrey (Eds.). Industrial Biotransformations. 2nd ed. Wiley-VCH. 2006. e-ISBN: 9783527608188. DOI: 10.1002/3527608184. Available as e-book through the KTH Library.
  • Bommarius & Riebel, Biocatalysis - Fundamentals and Applications, Wiley-VCH 2004. e-ISBN: 9783527602360. Available as e-book through the KTH Library.
  • Silverman, R. B. The Organic Chemistry of Enzyme-Catalyzed Reactions, Academic Press. 2002. ISBN 978-0-08-051336-2. Available as e-book through the KTH Library.
  • Peter Grunwald, BIOCATALYSIS - Biochemical Fundamentals and Applications, Imperial College Press 2009. ISBN 978-1-86094-771-1 (used as course text book 2012)
  • Adrie J. J. Straathof, Patrick Adlercreutz (Eds.) Applied biocatalysis. 2nd Taylor & Francis 2000

Examination and completion

Grading scale

P, F

Examination

  • INL1 - Hand in assignment, 1.0 credits, Grading scale: P, F
  • PRO1 - Project, 3.0 credits, Grading scale: P, F

Based on recommendation from KTH’s coordinator for disabilities, the examiner will decide how to adapt an examination for students with documented disability.

The examiner may apply another examination format when re-examining individual students.

The section below is not retrieved from the course syllabus:

Hand in assignment ( INL1 )

This part is assessed through submitted exercises and active participation in the scheduled workshops and guest lectures. Active participation in 80% of the workshops and guest lectures is required.

Project ( PRO1 )

This part is assessed by a written individual project report and a peer review of a report.

Other requirements for final grade

For the final grade, an approved written project report is required. Furthermore, 80% active participation in scheduled lectures and a passing grade on associated in-depth assignments that take the form of a reflective and critically examining analysis of selected research work in the field of biocatalysis are required.

Ethical approach

  • All members of a group are responsible for the group's work.
  • In any assessment, every student shall honestly disclose any help received and sources used.
  • In an oral assessment, every student shall be able to present and answer questions about the entire assignment and solution.

Further information

Changes of the course before this course offering

The number of scheduled workshops has been reduced to allow for more flexibility requested by the students. 

Round Facts

Start date

16 Jan 2024

Course offering

  • Spring 2024-60620

Language Of Instruction

English

Offered By

CBH/Industrial Biotechnology

Contacts

Course Coordinator

Teachers

Examiner