Class information for:
Level 1: CO2 CONCENTRATING MECHANISM//CARBOXYSOME//CARBON CONCENTRATING MECHANISM

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
4552 1767 43.3 71%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
3 4 PLANT SCIENCES//AGRONOMY//FOOD SCIENCE & TECHNOLOGY 1882812
7 3       PLANT SCIENCES//PLANT PHYSIOLOGY//ARABIDOPSIS 149859
981 2             C 4 PHOTOSYNTHESIS//ALTERNATIVE OXIDASE//CO2 CONCENTRATING MECHANISM 10597
4552 1                   CO2 CONCENTRATING MECHANISM//CARBOXYSOME//CARBON CONCENTRATING MECHANISM 1767

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CO2 CONCENTRATING MECHANISM authKW 1919086 8% 79% 141
2 CARBOXYSOME authKW 1145108 5% 82% 81
3 CARBON CONCENTRATING MECHANISM authKW 527926 3% 56% 55
4 PYRENOID authKW 409582 3% 44% 54
5 CARBONIC ANHYDRASE authKW 376051 13% 10% 228
6 BACTERIAL MICROCOMPARTMENTS authKW 351559 1% 88% 23
7 HCO3 UPTAKE authKW 190071 1% 100% 11
8 MOL PLANT PHYSIOL GRP address 155146 2% 29% 31
9 CARBON DIOXIDE CONCENTRATING MECHANISM authKW 139379 1% 73% 11
10 INORGANIC CARBON TRANSPORT authKW 127234 1% 82% 9

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 Plant Sciences 28503 55% 0% 978
2 Marine & Freshwater Biology 3321 13% 0% 234
3 Oceanography 1817 8% 0% 134
4 Microbiology 1241 12% 0% 217
5 Limnology 878 3% 0% 50
6 Ecology 858 9% 0% 156
7 Biochemistry & Molecular Biology 233 14% 0% 248
8 Cell Biology 164 7% 0% 124
9 Biophysics 86 4% 0% 65
10 Geosciences, Multidisciplinary 70 4% 0% 62

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOL PLANT PHYSIOL GRP 155146 2% 29% 31
2 MARINE BIOGEOSCI 77753 0% 75% 6
3 AVRON EVENARI MINERVA 71995 0% 83% 5
4 MOL PHYSIOL PL METABOLOME ANAL 51838 0% 100% 3
5 MOSHE SHILO 51838 0% 100% 3
6 MOSHE SHILO MINERVA 51838 0% 100% 3
7 COASTAL WETLANDS 44425 0% 43% 6
8 SCOTTISH CROP 40781 1% 17% 14
9 MINERVA PHOTOSYNTH ST S 38877 0% 75% 3
10 INGN MARITIMA CIENCIAS BIOL OCEAN RECURSOS 33223 0% 38% 5

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 PLANT PHYSIOLOGY 40796 13% 1% 223
2 PHOTOSYNTHESIS RESEARCH 25803 4% 2% 70
3 JOURNAL OF PHYCOLOGY 15474 3% 1% 61
4 CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE 15251 5% 1% 82
5 PLANT AND CELL PHYSIOLOGY 11142 4% 1% 67
6 BIOGEOSCIENCES 11043 3% 1% 46
7 FUNCTIONAL PLANT BIOLOGY 7427 2% 2% 27
8 PLANTA 6771 3% 1% 59
9 SOVIET PLANT PHYSIOLOGY 5493 1% 2% 21
10 PLANT CELL AND ENVIRONMENT 4659 2% 1% 37

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 CO2 CONCENTRATING MECHANISM 1919086 8% 79% 141 Search CO2+CONCENTRATING+MECHANISM Search CO2+CONCENTRATING+MECHANISM
2 CARBOXYSOME 1145108 5% 82% 81 Search CARBOXYSOME Search CARBOXYSOME
3 CARBON CONCENTRATING MECHANISM 527926 3% 56% 55 Search CARBON+CONCENTRATING+MECHANISM Search CARBON+CONCENTRATING+MECHANISM
4 PYRENOID 409582 3% 44% 54 Search PYRENOID Search PYRENOID
5 CARBONIC ANHYDRASE 376051 13% 10% 228 Search CARBONIC+ANHYDRASE Search CARBONIC+ANHYDRASE
6 BACTERIAL MICROCOMPARTMENTS 351559 1% 88% 23 Search BACTERIAL+MICROCOMPARTMENTS Search BACTERIAL+MICROCOMPARTMENTS
7 HCO3 UPTAKE 190071 1% 100% 11 Search HCO3+UPTAKE Search HCO3+UPTAKE
8 CARBON DIOXIDE CONCENTRATING MECHANISM 139379 1% 73% 11 Search CARBON+DIOXIDE+CONCENTRATING+MECHANISM Search CARBON+DIOXIDE+CONCENTRATING+MECHANISM
9 INORGANIC CARBON TRANSPORT 127234 1% 82% 9 Search INORGANIC+CARBON+TRANSPORT Search INORGANIC+CARBON+TRANSPORT
10 C I CONCENTRATING MECHANISM 120954 0% 100% 7 Search C+I+CONCENTRATING+MECHANISM Search C+I+CONCENTRATING+MECHANISM

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 RAE, BD , LONG, BM , BADGER, MR , PRICE, GD , (2013) FUNCTIONS, COMPOSITIONS, AND EVOLUTION OF THE TWO TYPES OF CARBOXYSOMES: POLYHEDRAL MICROCOMPARTMENTS THAT FACILITATE CO2 FIXATION IN CYANOBACTERIA AND SOME PROTEOBACTERIA.MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. VOL. 77. ISSUE 3. P. 357-379 157 72% 57
2 WANG, YJ , STESSMAN, DJ , SPALDING, MH , (2015) THE CO2 CONCENTRATING MECHANISM AND PHOTOSYNTHETIC CARBON ASSIMILATION IN LIMITING CO2: HOW CHLAMYDOMONAS WORKS AGAINST THE GRADIENT.PLANT JOURNAL. VOL. 82. ISSUE 3. P. 429 -448 119 71% 20
3 KAPLAN, A , REINHOLD, L , (1999) CO2 CONCENTRATING MECHANISMS IN PHOTOSYNTHETIC MICROORGANISMS.ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY. VOL. 50. ISSUE . P. 539 -+ 112 83% 407
4 BOBIK, TA , LEHMAN, BP , YEATES, TO , (2015) BACTERIAL MICROCOMPARTMENTS: WIDESPREAD PROKARYOTIC ORGANELLES FOR ISOLATION AND OPTIMIZATION OF METABOLIC PATHWAYS.MOLECULAR MICROBIOLOGY. VOL. 98. ISSUE 2. P. 193 -207 96 81% 11
5 MIYACHI, S , IWASAKI, I , SHIRAIWA, Y , (2003) HISTORICAL PERSPECTIVE ON MICROALGAL AND CYANOBACTERIAL ACCLIMATION TO LOW- AND EXTREMELY HIGH-CO2 CONDITIONS.PHOTOSYNTHESIS RESEARCH. VOL. 77. ISSUE 2-3. P. 139 -153 123 84% 41
6 GIORDANO, M , BEARDALL, J , RAVEN, JA , (2005) CO2 CONCENTRATING MECHANISMS IN ALGAE: MECHANISMS, ENVIRONMENTAL MODULATION, AND EVOLUTION.ANNUAL REVIEW OF PLANT BIOLOGY. VOL. 56. ISSUE . P. 99 -131 107 58% 521
7 PRICE, GD , BADGER, MR , WOODGER, FJ , LONG, BM , (2008) ADVANCES IN UNDERSTANDING THE CYANOBACTERIAL CO2-CONCENTRATING-MECHANISM (CCM): FUNCTIONAL COMPONENTS, CI TRANSPORTERS, DIVERSITY, GENETIC REGULATION AND PROSPECTS FOR ENGINEERING INTO PLANTS.JOURNAL OF EXPERIMENTAL BOTANY. VOL. 59. ISSUE 7. P. 1441 -1461 86 74% 215
8 MORONEY, JV , YNALVEZ, RA , (2007) PROPOSED CARBON DIOXIDE CONCENTRATING MECHANISM IN CHLAMYDOMONAS REINHARDTII.EUKARYOTIC CELL. VOL. 6. ISSUE 8. P. 1251 -1259 80 88% 89
9 CHOWDHURY, C , SINHA, S , CHUN, S , YEATES, TO , BOBIK, TA , (2014) DIVERSE BACTERIAL MICROCOMPARTMENT ORGANELLES.MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. VOL. 78. ISSUE 3. P. 438 -468 95 56% 30
10 GONZALEZ-ESQUER, CR , NEWNHAM, SE , KERFELD, CA , (2016) BACTERIAL MICROCOMPARTMENTS AS METABOLIC MODULES FOR PLANT SYNTHETIC BIOLOGY.PLANT JOURNAL. VOL. 87. ISSUE 1. P. 66 -75 75 78% 1

Classes with closest relation at Level 1


Rank Class id link
1 8479 SEAWEED BIOL//PULSE AMPLITUDE MODULATION PAM CHLOROPHYLL FLUOROMETRY//PHOTOSYNTHESIS
2 16904 PHOTORESPIRATION//GLYCOLATE OXIDASE//SERINE GLYOXYLATE AMINOTRANSFERASE
3 9626 COCCOLITHOPHORES//COCCOLITHS//EMILIANIA HUXLEYI
4 4807 RUBISCO//RUBISCO ACTIVASE//RIBULOSE 1 5 BISPHOSPHATE CARBOXYLASE OXYGENASE
5 36451 ALGAL RESPIRATION//3 3 4 DICHLORO PHENYL 1 1 DIMETHYLUREA//BICARBONATE INCORPORATION
6 10862 CYCLIC ELECTRON FLOW//CYCLIC ELECTRON TRANSPORT//CHLORORESPIRATION
7 16437 GLUCOSYLGLYCEROL//CYTOCHROME CM//CYTOPLASMIC OSMOLALITY
8 17029 DUNALIELLA SALINA//DUNALIELLA//DUNALIELLA VIRIDIS
9 18820 CHLAMYDOMONAS REINHARDTII//CALIF ALGAE BIOTECHNOL//SAN DIEGO ALGAE BIOTECHNOL
10 10383 SYNECHOCYSTIS//KAIC//CYANOBACTERIA

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