Class information for:
Level 1: DEUBIQUITINATING ENZYME//UBIQUITIN//DEUBIQUITINASE

Basic class information
Class id #P Avg. number of
references		 Database coverage
of references
3837 1898 53.0 95%


Bar chart of Publication_year

Last years might be incomplete

Hierarchy of classes
The table includes all classes above and classes immediately below the current class.


Cluster id Level Cluster label #P
0 4 BIOCHEMISTRY & MOLECULAR BIOLOGY//CELL BIOLOGY//ONCOLOGY 4064930
204 3       PROTEASOME//UBIQUITIN//UNFOLDED PROTEIN RESPONSE 52492
677 2             PROTEASOME//UBIQUITIN//PROTEASOME INHIBITOR 13186
3837 1                   DEUBIQUITINATING ENZYME//UBIQUITIN//DEUBIQUITINASE 1898

Terms with highest relevance score


rank Term termType Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 DEUBIQUITINATING ENZYME authKW 602188 4% 45% 83
2 UBIQUITIN authKW 486247 19% 8% 368
3 DEUBIQUITINASE authKW 407838 3% 47% 54
4 UBIQUITIN SPECIFIC PROTEASE authKW 358263 2% 64% 35
5 DEUBIQUITINATION authKW 284495 3% 32% 55
6 LUBAC authKW 200450 1% 69% 18
7 POLYUBIQUITIN CHAINS authKW 179039 1% 70% 16
8 HAUSP authKW 149952 1% 55% 17
9 USP7 authKW 149620 1% 47% 20
10 UBIQUITIN CHAINS authKW 139028 1% 79% 11

Web of Science journal categories


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with term
in class
1 Biochemistry & Molecular Biology 11132 62% 0% 1184
2 Cell Biology 9409 36% 0% 692
3 Biophysics 1093 10% 0% 183
4 Biochemical Research Methods 941 8% 0% 157
5 Oncology 269 8% 0% 157
6 Genetics & Heredity 98 4% 0% 85
7 Chemistry, Medicinal 46 2% 0% 43
8 Developmental Biology 24 1% 0% 21
9 Immunology 15 3% 0% 64
10 Parasitiology 4 1% 0% 12

Address terms


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 CELL BIOL METAB GRP 121909 1% 63% 12
2 BIOMOL STRUCT ORG 95902 2% 21% 29
3 CHA GEN HOSP 50017 1% 14% 23
4 CELL CYCLE CANC UNIT 48253 0% 50% 6
5 PROT MODIFICAT DE AT 36758 0% 29% 8
6 POLAK CANC VASC BIOL 36193 0% 75% 3
7 UBIQUITIN LIKE MOL CANC 36193 0% 75% 3
8 MOL SIGNALING CELL ACTIVAT 32173 0% 100% 2
9 OBSTET GYNECOL WOMENS HEATH 32169 0% 50% 4
10 CELL DEATH CANC INFLAMMAT CCCI 30306 0% 27% 7

Journals


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class
1 MOLECULAR CELL 15202 4% 1% 72
2 NATURE STRUCTURAL & MOLECULAR BIOLOGY 5789 1% 1% 28
3 EMBO REPORTS 3563 1% 1% 22
4 MOLECULAR & CELLULAR PROTEOMICS 3485 1% 1% 26
5 NATURE REVIEWS MOLECULAR CELL BIOLOGY 2940 1% 1% 15
6 NATURE CELL BIOLOGY 2600 1% 1% 21
7 JOURNAL OF BIOLOGICAL CHEMISTRY 2072 8% 0% 146
8 EMBO JOURNAL 1919 2% 0% 46
9 NATURE CHEMICAL BIOLOGY 1668 1% 1% 12
10 CELL 1574 2% 0% 39

Author Key Words


Rank Term Chi square Shr. of publ. in
class containing
term		 Class's shr. of
term's tot. occurrences		 #P with
term in
class		 LCSH search Wikipedia search
1 DEUBIQUITINATING ENZYME 602188 4% 45% 83 Search DEUBIQUITINATING+ENZYME Search DEUBIQUITINATING+ENZYME
2 UBIQUITIN 486247 19% 8% 368 Search UBIQUITIN Search UBIQUITIN
3 DEUBIQUITINASE 407838 3% 47% 54 Search DEUBIQUITINASE Search DEUBIQUITINASE
4 UBIQUITIN SPECIFIC PROTEASE 358263 2% 64% 35 Search UBIQUITIN+SPECIFIC+PROTEASE Search UBIQUITIN+SPECIFIC+PROTEASE
5 DEUBIQUITINATION 284495 3% 32% 55 Search DEUBIQUITINATION Search DEUBIQUITINATION
6 LUBAC 200450 1% 69% 18 Search LUBAC Search LUBAC
7 POLYUBIQUITIN CHAINS 179039 1% 70% 16 Search POLYUBIQUITIN+CHAINS Search POLYUBIQUITIN+CHAINS
8 HAUSP 149952 1% 55% 17 Search HAUSP Search HAUSP
9 USP7 149620 1% 47% 20 Search USP7 Search USP7
10 UBIQUITIN CHAINS 139028 1% 79% 11 Search UBIQUITIN+CHAINS Search UBIQUITIN+CHAINS

Core articles
The table includes core articles in the class. The following variables is taken into account for the relevance score of an article in a cluster c:
(1) Number of references referring to publications in the class.
(2) Share of total number of active references referring to publications in the class.
(3) Age of the article. New articles get higher score than old articles.
(4) Citation rate, normalized to year.


Rank Reference # ref. in
cl.		 Shr. of ref. in
cl.		 Citations
1 KOMANDER, D , RAPE, M , (2012) THE UBIQUITIN CODE.ANNUAL REVIEW OF BIOCHEMISTRY, VOL 81. VOL. 81. ISSUE . P. 203-229 97 53% 593
2 KULATHU, Y , KOMANDER, D , (2012) ATYPICAL UBIQUITYLATION - THE UNEXPLORED WORLD OF POLYUBIQUITIN BEYOND LYS48 AND LYS63 LINKAGES.NATURE REVIEWS MOLECULAR CELL BIOLOGY. VOL. 13. ISSUE 8. P. 508 -523 109 70% 188
3 SWATEK, KN , KOMANDER, D , (2016) UBIQUITIN MODIFICATIONS.CELL RESEARCH. VOL. 26. ISSUE 4. P. 399 -422 105 54% 13
4 GOPINATH, P , OHAYON, S , NAWATHA, M , BRIK, A , (2016) CHEMICAL AND SEMISYNTHETIC APPROACHES TO STUDY AND TARGET DEUBIQUITINASES.CHEMICAL SOCIETY REVIEWS. VOL. 45. ISSUE 15. P. 4171 -4198 129 67% 1
5 ALFANO, C , FAGGIANO, S , PASTORE, A , (2016) THE BALL AND CHAIN OF POLYUBIQUITIN STRUCTURES.TRENDS IN BIOCHEMICAL SCIENCES. VOL. 41. ISSUE 4. P. 371 -385 83 78% 4
6 SPASSER, L , BRIK, A , (2012) CHEMISTRY AND BIOLOGY OF THE UBIQUITIN SIGNAL.ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. VOL. 51. ISSUE 28. P. 6840 -6862 121 58% 49
7 FAGGIANO, S , ALFANO, C , PASTORE, A , (2016) THE MISSING LINKS TO LINK UBIQUITIN: METHODS FOR THE ENZYMATIC PRODUCTION OF POLYUBIQUITIN CHAINS.ANALYTICAL BIOCHEMISTRY. VOL. 492. ISSUE . P. 82 -90 56 90% 6
8 REYES-TURCU, FE , VENTII, KH , WILKINSON, KD , (2009) REGULATION AND CELLULAR ROLES OF UBIQUITIN-SPECIFIC DEUBIQUITINATING ENZYMES.ANNUAL REVIEW OF BIOCHEMISTRY. VOL. 78. ISSUE . P. 363-397 88 43% 507
9 LIM, KH , BAEK, KH , (2013) DEUBIQUITINATING ENZYMES AS THERAPEUTIC TARGETS IN CANCER.CURRENT PHARMACEUTICAL DESIGN. VOL. 19. ISSUE 22. P. 4039-4052 118 51% 16
10 ELLIOTT, PR , (2016) MOLECULAR BASIS FOR SPECIFICITY OF THE MET1-LINKED POLYUBIQUITIN SIGNAL.BIOCHEMICAL SOCIETY TRANSACTIONS. VOL. 44. ISSUE . P. 1581 -1602 92 65% 0

Classes with closest relation at Level 1


Rank Class id link
1 18772 UCH L1//UBIQUITIN CARBOXY TERMINAL HYDROLASE L1//DEGENERAT NEUROL DIS
2 8269 UBIQUITIN//POLYUBIQUITIN GENE//UBIQUITIN CONJUGATING ENZYME
3 9078 NEDD8//COP9 SIGNALOSOME//NEDDYLATION
4 19765 A20//RNF11//ZINC FINGER PROTEIN A20
5 31973 PUPYLATION//PROKARYOTIC UBIQUITIN LIKE PROTEIN//PAFA
6 22610 WWP1//WW DOMAIN//CKIP 1
7 36059 UBCH10//UBE2C//UBE2Q1
8 35756 UFM1//UBA5//UBE1DC1
9 6889 ESCRT//TSG101//ALG 2
10 22295 ISG15//ISGYLATION//USP18

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