Class information for:
Level 2: BIOINFORMATICS//BMC BIOINFORMATICS//GENOME RESEARCH

Basic class information
ID Publications Average number
of references		 Avg. shr. active
ref. in WoS
238 19563 39.7 79%


Bar chart of Publication_year

Last years might be incomplete

Classes in level above (level 3)


ID, lev.
above		 Publications Label for level above
159 56907 BIOINFORMATICS//BMC BIOINFORMATICS//MATHEMATICAL & COMPUTATIONAL BIOLOGY

Classes in level below (level 1)


ID, lev. below Publications Label for level below
341 3549 PROTEIN INTERACTION NETWORKS//PROTEIN PROTEIN INTERACTION NETWORKS//PROTEIN PROTEIN INTERACTION NETWORK
2302 2220 MOTIF DISCOVERY//CLOSEST STRING PROBLEM//MOTIF FINDING
4158 1760 JOURNAL OF BIOMEDICAL SEMANTICS//ZFIN//ZEBRAFISH INFORMAT NETWORK
6111 1463 TREE OF LIFE//HORIZONTAL GENE TRANSFER//LATERAL GENE TRANSFER
6346 1431 MULTIPLE SEQUENCE ALIGNMENT//T COFFEE//STATISTICAL ALIGNMENT
8147 1214 WHOLE GENOME DUPLICATION//GENET MOL CELLULAIRE ECT LEVU INTERE//GENOME DUPLICATION
8768 1150 EMBL OUTSTN//PROT INFORMAT OURCE//HLTH SCI TECHNOL ICIR
10621 981 ISOCHORES//EVOLUZ MOL//ISOCHORE
11477 912 GENE PREDICTION//GENE FINDING//GENE RECOGNITION
11935 879 SEX BIASED GENE EXPRESSION//SEXUAL ANTAGONISM//INTRALOCUS SEXUAL CONFLICT
13760 752 GENOME REARRANGEMENTS//SORTING BY REVERSALS//BREAKPOINT GRAPH
15428 642 INTRON GAIN//INTRON LOSS//INTRON EVOLUTION
18304 493 CIRCOS//BIODADOS//ORTHOLOGY
20708 388 CIS MOTIF//ARABIDOPSIS T87 CELL LINE//GENE ATLAS
21081 373 IROQUOIS//CONSERVED NONCODING ELEMENTS//ENERGY ENVIRONM BIOL COMP
22133 335 EVOLUTIONARY BIOINFORMAT//CLOSED LOOPS//SKEW PAIRS
22231 332 WRAP53//OVERLAPPING GENES//CUSTOM BIOTECHNOL SERV GRP
24275 266 PROGRAM COMPUTAT GENOM//CIFN//PROGRAMA GENOM COMPUTAC
25094 243 BIDIRECTIONAL PROMOTER//NEIGHBORING GENES//GENOME NETWORK PROJECT CORE GRPGENOM SCI
27819 180 PROCESSED PSEUDOGENES//PHYSICAL AND PSYCHOLOGICAL STRESSES//DUPLICATED PSEUDOGENES

Terms with highest relevance score


Rank Term Type of term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of publ.
in class
1 BIOINFORMATICS Journal 349 18% 9% 1744
2 BMC BIOINFORMATICS Journal 208 17% 6% 1119
3 GENOME RESEARCH Journal 87 15% 3% 547
4 BIOTECHNOL INFORMAT Address 78 19% 2% 371
5 JOURNAL OF COMPUTATIONAL BIOLOGY Journal 75 22% 2% 309
6 ISOCHORES Author keyword 71 62% 0% 74
7 GENOME REARRANGEMENTS Author keyword 67 43% 1% 119
8 COMPUTER APPLICATIONS IN THE BIOSCIENCES Journal 49 22% 1% 199
9 SORTING BY REVERSALS Author keyword 46 82% 0% 27
10 GENOME BIOLOGY Journal 44 13% 2% 331

Web of Science journal categories

Author Key Words


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class		 LCSH search Wikipedia search
1 ISOCHORES 71 62% 0% 74 Search ISOCHORES Search ISOCHORES
2 GENOME REARRANGEMENTS 67 43% 1% 119 Search GENOME+REARRANGEMENTS Search GENOME+REARRANGEMENTS
3 SORTING BY REVERSALS 46 82% 0% 27 Search SORTING+BY+REVERSALS Search SORTING+BY+REVERSALS
4 PROTEIN INTERACTION NETWORKS 44 51% 0% 62 Search PROTEIN+INTERACTION+NETWORKS Search PROTEIN+INTERACTION+NETWORKS
5 INTRON GAIN 41 81% 0% 25 Search INTRON+GAIN Search INTRON+GAIN
6 MULTIPLE SEQUENCE ALIGNMENT 39 29% 1% 114 Search MULTIPLE+SEQUENCE+ALIGNMENT Search MULTIPLE+SEQUENCE+ALIGNMENT
7 WHOLE GENOME DUPLICATION 36 44% 0% 63 Search WHOLE+GENOME+DUPLICATION Search WHOLE+GENOME+DUPLICATION
8 BREAKPOINT GRAPH 34 93% 0% 13 Search BREAKPOINT+GRAPH Search BREAKPOINT+GRAPH
9 MOTIF DISCOVERY 34 45% 0% 58 Search MOTIF+DISCOVERY Search MOTIF+DISCOVERY
10 GENE DUPLICATION 34 13% 1% 242 Search GENE+DUPLICATION Search GENE+DUPLICATION

Key Words Plus


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of publ.
in class
1 DATABASE 324 12% 13% 2634
2 INTERACTION MAP 254 56% 2% 308
3 FACTOR BINDING SITES 245 39% 3% 496
4 PROTEIN INTERACTION NETWORKS 228 48% 2% 345
5 FUNCTIONAL MODULES 200 65% 1% 192
6 INTERACTION NETWORKS 198 37% 2% 433
7 GENE ONTOLOGY 171 34% 2% 409
8 INTERACTOME 157 54% 1% 202
9 ANNOTATION 133 19% 3% 639
10 INTERACTION DATABASE 131 53% 1% 172

Journals


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of publ.
in class
1 BIOINFORMATICS 349 18% 9% 1744
2 BMC BIOINFORMATICS 208 17% 6% 1119
3 GENOME RESEARCH 87 15% 3% 547
4 JOURNAL OF COMPUTATIONAL BIOLOGY 75 22% 2% 309
5 COMPUTER APPLICATIONS IN THE BIOSCIENCES 49 22% 1% 199
6 GENOME BIOLOGY 44 13% 2% 331
7 GENOME BIOLOGY AND EVOLUTION 40 19% 1% 189
8 JOURNAL OF BIOMEDICAL SEMANTICS 37 41% 0% 70
9 DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION 37 26% 1% 120
10 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 29 17% 1% 162

Reviews


Title Publ. year Cit. Active references % act. ref.
to same field
Recent developments in the MAFFT multiple sequence alignment program 2008 1326 101 62%
Network medicine: a network-based approach to human disease 2011 697 117 52%
The evolution of gene duplications: classifying and distinguishing between models 2010 315 74 68%
Interactome Networks and Human Disease 2011 379 139 50%
Network biology: Understanding the cell's functional organization 2004 2718 83 34%
Network-based prediction of protein function 2007 323 81 79%
Protein networks in disease 2008 292 91 67%
Differential network biology 2012 174 78 36%
Lateral gene transfers and the origins of the eukaryote proteome: a view from microbial parasites 2015 7 41 41%
Computational tools for prioritizing candidate genes: boosting disease gene discovery 2012 92 110 61%

Address terms


Rank Address term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 BIOTECHNOL INFORMAT 78 19% 1.9% 371
2 LIB MED 32 17% 0.9% 176
3 UKG 30 100% 0.1% 12
4 EMBL OUTSTN 30 33% 0.4% 75
5 EVOLUZ MOL 28 61% 0.2% 30
6 PROGRAM COMPUTAT GENOM 27 76% 0.1% 19
7 EUROPEAN BIOINFORMAT 27 30% 0.4% 76
8 ZFIN 27 83% 0.1% 15
9 EVOLUTIONARY BIOINFORMAT 26 68% 0.1% 23
10 ZEBRAFISH INFORMAT NETWORK 21 90% 0.0% 9

Related classes at same level (level 2)


Rank Relatedness score Related classes
1 0.0000018977 BICLUSTERING//PROGRAM TRANSLAT IMMUNOVIROL BIODEF//MAYO VACCINE GRP
2 0.0000014178 NEXT GENERATION SEQUENCING//RNA SEQ//COPY NUMBER VARIATION
3 0.0000013580 PREDICTION WITH EXPERT ADVICE//UNIVERSAL CODING//GRAPHICAL REPRESENTATION
4 0.0000012055 BMC SYSTEMS BIOLOGY//FLUX BALANCE ANALYSIS//SYNTHETIC BIOLOGY
5 0.0000011184 SYSTEMATIC BIOLOGY//SEKT ORNITHOL//FOSSIL BIRDS
6 0.0000010627 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//PROTEIN FOLDING
7 0.0000008532 DISSOLVED DNA//NATURAL TRANSFORMATION//EDNA
8 0.0000008321 LANDSCAPE GENETICS//INBREEDING DEPRESSION//COALESCENT
9 0.0000007638 HUMAN ENDOGENOUS RETROVIRUS//ADAR//ENDOGENOUS RETROVIRUS
10 0.0000007369 DIOECIOUS PLANT//PLANT DEV GENET//SILENE LATIFOLIA