Class information for:
Level 1: MARKOV STATE MODELS//TRANSITION PATH SAMPLING//TRANSITION PATH THEORY

Basic class information
ID Publications Average number
of references		 Avg. shr. active
ref. in WoS
8439 1184 41.6 77%


Bar chart of Publication_year

Last years might be incomplete

Classes in level above (level 2)


ID, lev.
above		 Publications Label for level above
42 31225 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//PROTEIN FOLDING

Terms with highest relevance score


Rank Term Type of term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 MARKOV STATE MODELS Author keyword 19 80% 1% 12
2 TRANSITION PATH SAMPLING Author keyword 9 55% 1% 12
3 TRANSITION PATH THEORY Author keyword 9 83% 0% 5
4 ENHANCED SAMPLING Author keyword 8 36% 1% 17
5 IST SCI COMPUTAZ Address 7 43% 1% 13
6 ACTION DERIVED MOLECULAR DYNAMICS Author keyword 6 80% 0% 4
7 MILESTONING Author keyword 6 80% 0% 4
8 METADYNAMICS Author keyword 6 26% 2% 19
9 HYPER MOLECULAR DYNAMICS Author keyword 6 100% 0% 4
10 MARKOV STATE MODEL Author keyword 5 47% 1% 8

Web of Science journal categories

Author Key Words


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class		 LCSH search Wikipedia search
1 MARKOV STATE MODELS 19 80% 1% 12 Search MARKOV+STATE+MODELS Search MARKOV+STATE+MODELS
2 TRANSITION PATH SAMPLING 9 55% 1% 12 Search TRANSITION+PATH+SAMPLING Search TRANSITION+PATH+SAMPLING
3 TRANSITION PATH THEORY 9 83% 0% 5 Search TRANSITION+PATH+THEORY Search TRANSITION+PATH+THEORY
4 ENHANCED SAMPLING 8 36% 1% 17 Search ENHANCED+SAMPLING Search ENHANCED+SAMPLING
5 ACTION DERIVED MOLECULAR DYNAMICS 6 80% 0% 4 Search ACTION+DERIVED+MOLECULAR+DYNAMICS Search ACTION+DERIVED+MOLECULAR+DYNAMICS
6 MILESTONING 6 80% 0% 4 Search MILESTONING Search MILESTONING
7 METADYNAMICS 6 26% 2% 19 Search METADYNAMICS Search METADYNAMICS
8 HYPER MOLECULAR DYNAMICS 6 100% 0% 4 Search HYPER+MOLECULAR+DYNAMICS Search HYPER+MOLECULAR+DYNAMICS
9 MARKOV STATE MODEL 5 47% 1% 8 Search MARKOV+STATE+MODEL Search MARKOV+STATE+MODEL
10 CONFORMATION DYNAMICS 3 43% 1% 6 Search CONFORMATION+DYNAMICS Search CONFORMATION+DYNAMICS

Key Words Plus


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 STRING METHOD 45 55% 5% 57
2 INFREQUENT EVENTS 42 34% 8% 99
3 METADYNAMICS 28 44% 4% 49
4 HYPERDYNAMICS 27 78% 2% 18
5 RARE EVENTS 18 23% 6% 71
6 PROTEIN FOLDING KINETICS 17 33% 4% 43
7 STATE MODELS 17 52% 2% 23
8 ISOCOMMITTOR SURFACES 15 71% 1% 12
9 ACCELERATED MOLECULAR DYNAMICS 10 30% 2% 29
10 ALANINE DIPEPTIDE 9 17% 4% 48

Journals

Reviews


Title Publ. year Cit. Active references % act. ref.
to same field
Practical and conceptual path sampling issues 2015 2 52 92%
A critical appraisal of Markov state models 2015 2 23 91%
Discovering Mountain Passes via Torchlight: Methods for the Definition of Reaction Coordinates and Pathways in Complex Macromolecular Reactions 2013 21 107 58%
Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science 2008 291 133 38%
Accelerated dynamics: Mathematical foundations and algorithmic improvements 2015 2 6 67%
Metadynamics 2011 111 119 34%
Metadynamics as a tool for exploring free energy landscapes of chemical reactions 2006 155 40 60%
Forward flux sampling for rare event simulations 2009 95 84 54%
Towards fast, rigorous and efficient conformational sampling of biomolecules: Advances in accelerated molecular dynamics 2015 2 54 54%
Everything you wanted to know about Markov State Models but were afraid to ask 2010 65 44 61%

Address terms


Rank Address term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 IST SCI COMPUTAZ 7 43% 1.1% 13
2 SIMBIOS NIH BIOMED COMPUTAT 4 67% 0.3% 4
3 MICMAC PROJECT TEAM 2 33% 0.5% 6
4 MATHEON 2 44% 0.3% 4
5 IST SCI COMPUTAZIONALI 2 43% 0.3% 3
6 COMPUTAT BIOPHYS GRIB IMIM 1 38% 0.3% 3
7 INTERDISCIPLINARY ADV MAT SIMULAT ICAMS 1 50% 0.2% 2
8 SYST BIOL HUMAN HLTH 1 16% 0.6% 7
9 HIGH PERFORMANCE SIMULAT CHIPS 1 27% 0.3% 4
10 HIGH PERFORMANCE CLUSTER COMP 1 33% 0.2% 2

Related classes at same level (level 1)


Rank Relatedness score Related classes
1 0.0000214849 VALLEY RIDGE INFLECTION POINT//NEWTON TRAJECTORY//GRADIENT EXTREMAL
2 0.0000193027 BAKER CHEM CHEM BIOL//REPLICA EXCHANGE METHOD//GENERALIZED ENSEMBLE ALGORITHM
3 0.0000142003 ENVIRONM IND CHEM//ONE STEP PERTURBATION//SAMPL4
4 0.0000121293 PROTEIN FOLDING//PHI VALUE//CONTACT ORDER
5 0.0000108954 ELASTIC NETWORK MODEL//ELASTIC NETWORK MODELS//NORMAL MODE ANALYSIS
6 0.0000084594 BETA HAIRPIN//SIDE CHAIN INTERACTIONS//TRP CAGE
7 0.0000083056 CRITICAL DROPLET//CRITICAL DROPLETS//METASTABLE TRANSITION TIME
8 0.0000076350 CARBONIC ACID//AUTOCATALYTIC DECOMPOSITION REACTION//PROTON TRANSFER BARRIERS
9 0.0000071494 BIOPHYS MODELING SIMULAT//ALL ATOM RECONSTRUCTION//BIOL MODELING SIMULAT
10 0.0000060912 ATMOSPHERE OCEAN SCI//MULTISCALE DIFFUSIONS//MORI ZWANZIG