Class information for:
Level 1: BAKER CHEM CHEM BIOL//REPLICA EXCHANGE METHOD//GENERALIZED ENSEMBLE ALGORITHM

Basic class information
ID Publications Average number
of references		 Avg. shr. active
ref. in WoS
6257 1443 37.4 76%


Bar chart of Publication_year

Last years might be incomplete

Classes in level above (level 2)


ID, lev.
above		 Publications Label for level above
42 31225 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS//PROTEIN STRUCTURE PREDICTION//PROTEIN FOLDING

Terms with highest relevance score


Rank Term Type of term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 BAKER CHEM CHEM BIOL Address 25 27% 5% 77
2 REPLICA EXCHANGE METHOD Author keyword 20 58% 2% 23
3 GENERALIZED ENSEMBLE ALGORITHM Author keyword 19 80% 1% 12
4 MULTICANONICAL Author keyword 19 76% 1% 13
5 MULTICANONICAL SIMULATION Author keyword 17 79% 1% 11
6 UNRES FORCE FIELD Author keyword 15 88% 0% 7
7 GENERALIZED ENSEMBLE SIMULATIONS Author keyword 13 80% 1% 8
8 MULTICANONICAL ALGORITHM Author keyword 11 65% 1% 11
9 MULTICANONICAL MOLECULAR DYNAMICS Author keyword 11 67% 1% 10
10 WANG LANDAU SAMPLING Author keyword 11 54% 1% 14

Web of Science journal categories

Author Key Words


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class		 LCSH search Wikipedia search
1 REPLICA EXCHANGE METHOD 20 58% 2% 23 Search REPLICA+EXCHANGE+METHOD Search REPLICA+EXCHANGE+METHOD
2 GENERALIZED ENSEMBLE ALGORITHM 19 80% 1% 12 Search GENERALIZED+ENSEMBLE+ALGORITHM Search GENERALIZED+ENSEMBLE+ALGORITHM
3 MULTICANONICAL 19 76% 1% 13 Search MULTICANONICAL Search MULTICANONICAL
4 MULTICANONICAL SIMULATION 17 79% 1% 11 Search MULTICANONICAL+SIMULATION Search MULTICANONICAL+SIMULATION
5 UNRES FORCE FIELD 15 88% 0% 7 Search UNRES+FORCE+FIELD Search UNRES+FORCE+FIELD
6 GENERALIZED ENSEMBLE SIMULATIONS 13 80% 1% 8 Search GENERALIZED+ENSEMBLE+SIMULATIONS Search GENERALIZED+ENSEMBLE+SIMULATIONS
7 MULTICANONICAL ALGORITHM 11 65% 1% 11 Search MULTICANONICAL+ALGORITHM Search MULTICANONICAL+ALGORITHM
8 MULTICANONICAL MOLECULAR DYNAMICS 11 67% 1% 10 Search MULTICANONICAL+MOLECULAR+DYNAMICS Search MULTICANONICAL+MOLECULAR+DYNAMICS
9 WANG LANDAU SAMPLING 11 54% 1% 14 Search WANG+LANDAU+SAMPLING Search WANG+LANDAU+SAMPLING
10 MULTIBARIC MULTITHERMAL ENSEMBLE 11 100% 0% 6 Search MULTIBARIC+MULTITHERMAL+ENSEMBLE Search MULTIBARIC+MULTITHERMAL+ENSEMBLE

Key Words Plus


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 MULTICANONICAL ENSEMBLE 85 69% 5% 73
2 SPIN GLASS SIMULATIONS 74 79% 3% 48
3 ISOLATED C PEPTIDE 55 70% 3% 46
4 HIERARCHICAL DESIGN 52 80% 2% 32
5 MULTIPLE MINIMA PROBLEM 48 40% 7% 96
6 MULTICANONICAL ALGORITHMS 46 78% 2% 31
7 MULTICANONICAL ALGORITHM 46 76% 2% 32
8 MULTIBARIC MULTITHERMAL ENSEMBLE 38 86% 1% 19
9 HYDROGEN BOND INTERACTIONS 29 26% 7% 97
10 PROTEIN STRUCTURE SIMULATIONS 25 65% 2% 24

Journals

Reviews


Title Publ. year Cit. Active references % act. ref.
to same field
Parallel tempering: Theory, applications, and new perspectives 2005 373 90 38%
Equilibrium Sampling in Biomolecular Simulations 2011 59 126 39%
Advanced replica-exchange sampling to study the flexibility and plasticity of peptides and proteins 2013 12 89 54%
Computational techniques for efficient conformational sampling of proteins 2008 66 41 51%
Generalized-ensemble algorithms for molecular simulations of biopolymers 2001 441 118 61%
Density of States-Based Molecular Simulations 2012 9 114 43%
New Monte Carlo algorithms for protein folding 1999 165 71 51%
Atomic simulations of protein folding, using the replica exchange algorithm 2004 71 46 41%
Protein-folding dynamics: Overview of molecular simulation techniques 2007 143 132 12%
Applications of the Wang-Landau Algorithm to Phase Transitions of a Single Polymer Chain 2013 2 35 43%

Address terms


Rank Address term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 BAKER CHEM CHEM BIOL 25 27% 5.3% 77
2 ADV SIMULAT IAS 2 6 80% 0.3% 4
3 THEORET SCI NTZ 6 30% 1.2% 18
4 SOFT MATTER SYST GRP 5 60% 0.4% 6
5 FESTKORPERFOR IFF 2 4 75% 0.2% 3
6 FUNCT MOL SCI 4 11% 2.2% 32
7 JOHN VON NEUMAN COMP 3 100% 0.2% 3
8 PROT INFORMAT 3 28% 0.7% 10
9 JOHN VON NEUMANN COMP 3 12% 1.5% 22
10 TASK 3 60% 0.2% 3

Related classes at same level (level 1)


Rank Relatedness score Related classes
1 0.0000193027 MARKOV STATE MODELS//TRANSITION PATH SAMPLING//TRANSITION PATH THEORY
2 0.0000154812 HP MODEL//STATISTICAL POTENTIALS//PROTEIN STRUCTURE PREDICTION
3 0.0000138391 BIOINFORMAT TELEMED//HYDROPHOBICITY DEFICIENCY//HELIX INTERACTIONS
4 0.0000130059 BETA HAIRPIN//SIDE CHAIN INTERACTIONS//TRP CAGE
5 0.0000125384 LOOP PREDICTION//LOOP MODELING//STEPWISE FOLDING
6 0.0000124089 ENVIRONM IND CHEM//ONE STEP PERTURBATION//SAMPL4
7 0.0000104194 PERTURBED MATRIX METHOD//ANHARMONIC SOLID//CHEM QUANTUM PHYS GRP
8 0.0000103349 PROTEIN FOLDING//PHI VALUE//CONTACT ORDER
9 0.0000084183 NAKA WORKS//CYCLOALCANES//CONFORMATIONAL POPULATION
10 0.0000081377 PARTITION FUNCTION ZEROS//ANTIFERROMAGNETIC POTTS MODEL//GRP MODELIZAC SIMULAC NUMER MATEMAT IND