Class information for:
Level 1: PHOTOACTIVE YELLOW PROTEIN//PHOTOACTIVE YELLOW PROTEIN PYP//XANTHOPSINS

Basic class information
ID Publications Average number
of references		 Avg. shr. active
ref. in WoS
19773 426 42.0 88%


Bar chart of Publication_year

Last years might be incomplete

Classes in level above (level 2)


ID, lev.
above		 Publications Label for level above
1119 9219 BACTERIORHODOPSIN//PHOTOCYCLE//PHYTOCHROME

Terms with highest relevance score


Rank Term Type of term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 PHOTOACTIVE YELLOW PROTEIN Author keyword 61 77% 10% 41
2 PHOTOACTIVE YELLOW PROTEIN PYP Author keyword 11 78% 2% 7
3 XANTHOPSINS Author keyword 6 100% 1% 4
4 ECTOTHIORHODOSPIRA HALOPHILA Author keyword 5 60% 1% 6
5 PYP Author keyword 3 50% 1% 4
6 OXYGEN MICROSCOPY COMI Address 2 67% 0% 2
7 PHOTORECEPTOR PROTEIN Author keyword 2 67% 0% 2
8 PHOTOACTIVE PROTEINS Author keyword 2 43% 1% 3
9 LOW BARRIER HYDROGEN BOND LBHB Author keyword 1 100% 0% 2
10 PYP CHROMOPHORE Author keyword 1 100% 0% 2

Web of Science journal categories

Author Key Words


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class		 LCSH search Wikipedia search
1 PHOTOACTIVE YELLOW PROTEIN 61 77% 10% 41 Search PHOTOACTIVE+YELLOW+PROTEIN Search PHOTOACTIVE+YELLOW+PROTEIN
2 PHOTOACTIVE YELLOW PROTEIN PYP 11 78% 2% 7 Search PHOTOACTIVE+YELLOW+PROTEIN+PYP Search PHOTOACTIVE+YELLOW+PROTEIN+PYP
3 XANTHOPSINS 6 100% 1% 4 Search XANTHOPSINS Search XANTHOPSINS
4 ECTOTHIORHODOSPIRA HALOPHILA 5 60% 1% 6 Search ECTOTHIORHODOSPIRA+HALOPHILA Search ECTOTHIORHODOSPIRA+HALOPHILA
5 PYP 3 50% 1% 4 Search PYP Search PYP
6 PHOTORECEPTOR PROTEIN 2 67% 0% 2 Search PHOTORECEPTOR+PROTEIN Search PHOTORECEPTOR+PROTEIN
7 PHOTOACTIVE PROTEINS 2 43% 1% 3 Search PHOTOACTIVE+PROTEINS Search PHOTOACTIVE+PROTEINS
8 LOW BARRIER HYDROGEN BOND LBHB 1 100% 0% 2 Search LOW+BARRIER+HYDROGEN+BOND+LBHB Search LOW+BARRIER+HYDROGEN+BOND+LBHB
9 PYP CHROMOPHORE 1 100% 0% 2 Search PYP+CHROMOPHORE Search PYP+CHROMOPHORE
10 TIME RESOLVED CRYSTALLOGRAPHY 1 23% 1% 5 Search TIME+RESOLVED+CRYSTALLOGRAPHY Search TIME+RESOLVED+CRYSTALLOGRAPHY

Key Words Plus


Rank Web of Science journal category Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ. in
class
1 ECTOTHIORHODOSPIRA HALOPHILA 257 68% 54% 228
2 HALOPHILIC PHOTOTROPHIC BACTERIUM 188 92% 17% 73
3 LINKED 4 HYDROXYCINNAMYL CHROMOPHORE 135 85% 16% 70
4 PHOTOCYCLE INTERMEDIATE 128 86% 15% 64
5 BACTERIUM ECTOTHIORHODOSPIRA HALOPHILA 91 85% 11% 47
6 P COUMARIC ACID 63 42% 27% 117
7 PHOTOTROPHIC BACTERIUM 59 61% 15% 62
8 FEMTOSECOND PICOSECOND FLUORESCENCE 57 95% 4% 19
9 PURPLE PHOTOTROPHIC BACTERIUM 50 57% 14% 58
10 BLUE SHIFTED INTERMEDIATE 45 94% 4% 16

Journals

Reviews


Title Publ. year Cit. Active references % act. ref.
to same field
Structure and photoreaction of photoactive yellow protein, a structural prototype of the PAS domain superfamily 2007 26 90 94%
Photoactive Yellow Protein, a new type of photoreceptor protein: Will this "yellow lab" bring us where we want to go? 2003 167 109 65%
Identification of six new photoactive yellow proteins - Diversity and structure-function relationships in a bacterial blue light photoreceptor 2008 20 105 81%
Initial photoinduced dynamics of the photoactive yellow protein 2005 39 54 83%
Ultrafast fluorescence upconversion technique and its applications to proteins 2015 1 40 33%
Proton transfer reactions and hydrogen-bond networks in protein environments 2014 8 89 26%
Photodynamics in Complex Environments: Ab Initio Multiple Spawning Quantum Mechanical/Molecular Mechanical Dynamics 2009 114 103 20%
Time-resolved crystallography and protein design: signalling photoreceptors and optogenetics 2014 4 29 34%
Photoactive yellow protein, bacteriophytochrome, and sensory rhodopsin in purple phototrophic bacteria 2004 44 77 42%
Investigations into the dynamics and mechanisms of ultrafast photoinduced reactions taking place in photoresponsive protein nanospaces (PINS) 2004 36 27 44%

Address terms


Rank Address term Relevance score
(tfidf)		 Class's shr.
of term's tot.
occurrences		 Shr. of publ.
in class containing
term		 Num. of
publ.
in class
1 OXYGEN MICROSCOPY COMI 2 67% 0.5% 2
2 BIOCARS 1 33% 0.7% 3
3 SCI TECHNOL ENTREPRENEURSHIP 1 30% 0.7% 3
4 ADM SAFETY HYG 1 40% 0.5% 2
5 EC SLATER 1 10% 2.1% 9
6 BIOL INFORMAT PROC 1 1 16% 1.2% 5
7 MOL MICROBIAL PHYSIOL 1 23% 0.7% 3
8 ADV RADIAT SCI 1 50% 0.2% 1
9 PHYS CHIM MAT STRASBOURGGRP OPT NON LINEA 1 50% 0.2% 1
10 UMR 9015 1 25% 0.5% 2

Related classes at same level (level 1)


Rank Relatedness score Related classes
1 0.0000144606 PHOTOTROPIN//CHLOROPLAST MOVEMENT//BLUF
2 0.0000142073 BATHORHODOPSIN//PROTONATED SCHIFF BASE//RETINAL
3 0.0000110952 LAUE DIFFRACTION//UPR 9015//WEISSENBERG CAMERAS
4 0.0000102416 SERIAL FEMTOSECOND CRYSTALLOGRAPHY//MACROMOLECULAR CRYSTALLOGRAPHY//SERIAL CRYSTALLOGRAPHY
5 0.0000060856 TRANSIENT REFLECTING GRATING//TRANSIENT REFLECTING GRATINGS//ANISOTROPY OF THE REFRACTIVE INDICES
6 0.0000059981 HEME SENSOR//FIXL//COOA
7 0.0000052281 KETOSTEROID ISOMERASE//LOW BARRIER HYDROGEN BONDS//LOW BARRIER HYDROGEN BOND
8 0.0000050915 BACTERIORHODOPSIN//PHOTOCYCLE//PURPLE MEMBRANE
9 0.0000048983 HYDROGEN BONDING DYNAMICS//4 HYDROXYFLUORENONE//SPECTRAL REDSHIFT
10 0.0000048677 EXTREMELY LOCALIZED MOLECULAR ORBITALS//ASEP MD//LINK ATOM